Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,298,967 – 5,299,084 |
Length | 117 |
Max. P | 0.823439 |
Location | 5,298,967 – 5,299,084 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -25.69 |
Energy contribution | -27.25 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.18 |
Mean z-score | -2.58 |
Structure conservation index | 0.65 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5298967 117 - 22224390 UGGGUCUUUGCGGUCGCUCAGAAAAUUAUUUCAAACCACCUGAUAUGGUUAUCAGAAAGGAUCCACCGAUGGCAGCUUGUAACUUUGCCCAUCGUGUUGCAGCUGCAUCGUUUUCUA (((((((((((....))...((((....)))).......((((((....)))))).))))))))).(((((.(((((.(((((............)))))))))))))))....... ( -35.90) >DroSec_CAF1 35887 116 - 1 UGGGGCUUUGCGGGCGCUCGGAAAAUUAUUUCAAACCACCUGAUAUGGUUAUCAGAAAGGAGC-GCCUGUGGCAGCUUGUAACUUUGCCCAUCGUGUUGCAGCUGCAUCGUUUUCCA .((((....((((((((((.((((....)))).......((((((....))))))....))))-)))))).((((((.(((((............)))))))))))......)))). ( -44.60) >DroSim_CAF1 26712 116 - 1 UGGGGCUUUGCGGGCGCUCGGAAAAUUAUUUCAAACCACCUGAUAUGGUUAUCAGAAAGGAGC-GCCUGUGGCAGCUUGUAACUUUGCCCAUCGUGUUGCAGCUGCAUCGUUUUCCA .((((....((((((((((.((((....)))).......((((((....))))))....))))-)))))).((((((.(((((............)))))))))))......)))). ( -44.60) >DroEre_CAF1 37339 115 - 1 UGCAGCCCGGU-AGCGUCCAGAAAAUUAUUUCAAACCACCUGAUAGGGUUAUCAAACAGGGGC-GCCCGUGGCAACUUGUUAUUUUACCCAUCAUGUUGCAGCUGCAUCAUUUUCCG ((((((...((-(((((...((((....)))).........(((.((((.....((((((...-(((...)))..)))))).....)))))))))))))).)))))).......... ( -33.90) >consensus UGGGGCUUUGCGGGCGCUCAGAAAAUUAUUUCAAACCACCUGAUAUGGUUAUCAGAAAGGAGC_GCCUGUGGCAGCUUGUAACUUUGCCCAUCGUGUUGCAGCUGCAUCGUUUUCCA .(((.....((((((((((.((((....)))).......((((((....))))))....)))).)))))).((((((.(((((............))))))))))).......))). (-25.69 = -27.25 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:57 2006