Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,296,579 – 5,296,693 |
Length | 114 |
Max. P | 0.850761 |
Location | 5,296,579 – 5,296,693 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -17.38 |
Consensus MFE | -11.41 |
Energy contribution | -11.97 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.66 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5296579 114 + 22224390 UAUACAUAUGAAAAUGUAUGAUUCUUGGCGCAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA (((((((......))))))).......((((((...............((((((.....))))))...........(((((((((........)).)))))))..))))))... ( -21.40) >DroSec_CAF1 33616 102 + 1 AAUACAUAAACAUACGUA------------CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUAAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA ...............(((------------(((...............((((((.....))))))............(((.((((........)))).)))....))))))... ( -15.30) >DroSim_CAF1 24440 102 + 1 AAUACAUAAACAUACGUA------------CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA ...............(((------------(((...............((((((.....))))))...........(((((((((........)).)))))))..))))))... ( -15.90) >DroEre_CAF1 34964 95 + 1 -------------------GAUUCUUGGCGCACAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA -------------------..........(((((..............((((((.....))))))...........(((((((((........)).)))))))...)))))... ( -16.90) >consensus AAUACAUAAACAUACGUA____________CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA .............................(((((..............((((((.....))))))...........(((((((((........)).)))))))...)))))... (-11.41 = -11.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:56 2006