Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,296,218 – 5,296,330 |
Length | 112 |
Max. P | 0.507393 |
Location | 5,296,218 – 5,296,330 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -14.10 |
Energy contribution | -14.94 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.12 |
Mean z-score | -2.13 |
Structure conservation index | 0.52 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5296218 112 - 22224390 AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UAAAAUUCUACUUACUGCAUAUAUUAUGU-------AUUCGUAGUUACACAUGCAUGCACUCGUUAAUU .....((...((((((((..((((..(((((((...((.(((((......-...............))))).))))))))-------)..))))...))))))))...)).......... ( -22.80) >DroSec_CAF1 33272 107 - 1 AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UGAGAUUCUACUUA-----UGUAUUAUGU-------AAUCGUAGUCACACAUGCCUGCACUCGUUAAUU .....((.((((((((((..((((....)))).....((.(((((.(((.-((((......))))-----.)))..))))-------).))......)))))))))).)).......... ( -27.40) >DroSim_CAF1 24097 106 - 1 AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UGAGAUUCUACUUA-----UGUAUUAUGU-------AAUCCUCCU-AGACAUGCCUGCACUCGUUAAUU .....((.((((((((....((((....)))).....((.(((((.(((.-((((......))))-----.)))..))))-------).)).....-..)))))))).)).......... ( -22.90) >DroEre_CAF1 34625 107 - 1 UAAUCUGAAGGUGUGUGUAAUAUGCGUGCAUAAAUCUCAAUGCAAUUUCC-UGGGAUUCUGCAUA-----UGUAUUAUGU-------AUUCGUACUUGCACAUGGCUGCACUCAUUAAUU .....((.((.(((((((((((((.((((((((....(((((((...((.-...))...))))).-----))..))))))-------)).)))).))))))))).)).)).......... ( -28.60) >DroYak_CAF1 34779 114 - 1 -AAUCUGAAGGCGUGUGUAAUAUGCGUGCAUAAAUCACAAUGCAAUGGCAUUGAGAUGCUGCAAA-----UGUAUUAUGUAUUAUGGAUUCGUAGUUACACAUGGCUGCACUCGUUAAUU -....((.((.((((((((((.((((((((...(((.((((((....)))))).)))..))))((-----(.(((........))).))))))))))))))))).)).)).......... ( -32.70) >consensus AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC_UGAGAUUCUACUUA_____UGUAUUAUGU_______AUUCGUAGUUACACAUGCCUGCACUCGUUAAUU .....((.((((((((((..((((..(((((........)))))...............(((.........)))................))))...)))))))))).)).......... (-14.10 = -14.94 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:55 2006