Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,295,779 – 5,295,898 |
Length | 119 |
Max. P | 0.888087 |
Location | 5,295,779 – 5,295,898 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.71 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -24.40 |
Energy contribution | -24.16 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.19 |
Mean z-score | -1.99 |
Structure conservation index | 0.78 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5295779 119 - 22224390 UCUCGGAGAGAAUCCCACAGCAAAAAA-AAGGGAAACCCAACCUGUUGCUAGCCAGCUUCUCUAGAGGAUCCGCGCCGAAACCACACGGUUUCCUUUUCCGCCGCUUUCCACUUUUCACU ....((((((........(((((....-..((....)).......))))).((...((((....))))....))...((((((....))))))...........)))))).......... ( -28.82) >DroSec_CAF1 32827 106 - 1 UCUCGGAGAGAAUCCC-CAGCGGA--A-AAGGGAAACCCAACCUGUUGCUAGCCAGCUUCUCUAGAGGAUCCAUGCCGAAACCACACGGUUUCCUUUUCCGCCGCUUUCC---------- ....((((((......-..(((((--(-((((((........(((........)))((((....)))).))).....((((((....)))))))))))))))..))))))---------- ( -31.80) >DroSim_CAF1 23649 109 - 1 UCUCGCAGAGAAUCCC-CAGCGGA--A-AAGGGAAACCCAACCUGUUGCCAGCCAGCUUCUCUAGAGGAUCCAUGCCGAAACCACACGGUUUCCUUUUCCGCCGCUUUCCACU------- ((((...)))).....-..(((((--(-((((.(((((.......(((.((.....((((....)))).....)).)))........)))))))))))))))...........------- ( -29.56) >DroEre_CAF1 34067 117 - 1 UCUCGGAGAGAGUACC-CGGCGAA--AAAAGGGAAACCCAACCUGUUGCUAGCCAGCUCCUCCAGAGGAUCCACGCCGAAACCACACGGUUUCCUUUUCCGCCGCCUUCCACUUUCCACU ....((((((......-(((((..--.(((((((((((......((((.....))))((((....))))..................))))))))))).))))).......))))))... ( -35.62) >DroYak_CAF1 34214 116 - 1 UCUCGGAGAGAAUCCC-CAGCGAA--A-AAGGGAAACCCAACCUGUUGCUAGCCAGCUUCUCUAGAGGAUCCACACCGUAACCACACGGUUUCCUUUUCCGCCGCUUUCCACUUUCCACU ....((((((......-.((((..--(-((((((((((......(((((.......((((....)))).........))))).....)))))))))))....)))).....))))))... ( -30.79) >consensus UCUCGGAGAGAAUCCC_CAGCGAA__A_AAGGGAAACCCAACCUGUUGCUAGCCAGCUUCUCUAGAGGAUCCACGCCGAAACCACACGGUUUCCUUUUCCGCCGCUUUCCACUUU_CACU ...(((((((((......(((((.......((....)).......))))).......))))).((((((.....((((........)))).))))))))))................... (-24.40 = -24.16 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:54 2006