Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,293,815 – 5,293,935 |
Length | 120 |
Max. P | 0.903081 |
Location | 5,293,815 – 5,293,935 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -17.24 |
Energy contribution | -17.90 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5293815 120 + 22224390 AAUCCGGUGACCUUGCACCUUCCAGUUUAGCAGUGUGCCAAGCCCACCUCCUGCACCUCAUUGAAUCCAUUGAAUGGAAUGCGACCCCUUUUCUUUUUUCUAUUUUUUUUCUGGGUUUUU (((((((((..(((((((((.(.......).)).))).))))..))))...((((..(((((.((....)).)))))..)))).............................)))))... ( -23.10) >DroSec_CAF1 30964 94 + 1 AAUCCGGUGACCUUGCACA---CUGUGUACCAGUGUGCCA-GCCCACCGC---CACCUCAUUGAACCCAUUGAAUGGAAUGCGACCCCUUUU-------------------UCGGGUUCC ....(((((..((.(((((---(((.....)))))))).)-)..))))).---.........((((((...(((.((........)).))).-------------------..)))))). ( -33.60) >DroSim_CAF1 21748 96 + 1 AAUCCGGUGACCUUGCACCU-CCAGUGUACCAGUGUGCCA-GCCCACCGC---CACCUCAUUGAACCCAUUGAAUGGAAUGCGACCCCUUUU-------------------UCGGGUUUC ....(((((..((.((((((-..........)).)))).)-)..)))))(---((..(((.((....)).))).))).....(((((.....-------------------..))))).. ( -23.50) >consensus AAUCCGGUGACCUUGCACCU_CCAGUGUACCAGUGUGCCA_GCCCACCGC___CACCUCAUUGAACCCAUUGAAUGGAAUGCGACCCCUUUU___________________UCGGGUUUC ..(((((((....(((((......)))))...(((.((...)).)))......))))(((.((....)).)))..)))....(((((..........................))))).. (-17.24 = -17.90 + 0.67)
Location | 5,293,815 – 5,293,935 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -34.65 |
Consensus MFE | -20.08 |
Energy contribution | -19.86 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.42 |
Structure conservation index | 0.58 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5293815 120 - 22224390 AAAAACCCAGAAAAAAAAUAGAAAAAAGAAAAGGGGUCGCAUUCCAUUCAAUGGAUUCAAUGAGGUGCAGGAGGUGGGCUUGGCACACUGCUAAACUGGAAGGUGCAAGGUCACCGGAUU .....(((........................)))(((((((..((((.((....)).))))..))))....(((((.((((.(((.((.((.....)).))))))))).))))).))). ( -29.76) >DroSec_CAF1 30964 94 - 1 GGAACCCGA-------------------AAAAGGGGUCGCAUUCCAUUCAAUGGGUUCAAUGAGGUG---GCGGUGGGC-UGGCACACUGGUACACAG---UGUGCAAGGUCACCGGAUU .(((((((.-------------------.....(((......)))......))))))).........---.((((((.(-(.((((((((.....)))---))))).)).)))))).... ( -41.40) >DroSim_CAF1 21748 96 - 1 GAAACCCGA-------------------AAAAGGGGUCGCAUUCCAUUCAAUGGGUUCAAUGAGGUG---GCGGUGGGC-UGGCACACUGGUACACUGG-AGGUGCAAGGUCACCGGAUU ....(((..-------------------....)))(((.....(((((((.((....)).))).)))---)((((((.(-(.((((.(..(....)..)-..)))).)).))))))))). ( -32.80) >consensus GAAACCCGA___________________AAAAGGGGUCGCAUUCCAUUCAAUGGGUUCAAUGAGGUG___GCGGUGGGC_UGGCACACUGGUACACUGG_AGGUGCAAGGUCACCGGAUU .....((..........................(..((.((((......))))))..)..............(((((.(...((((................))))..).)))))))... (-20.08 = -19.86 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:53 2006