Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,290,524 – 5,290,641 |
Length | 117 |
Max. P | 0.838625 |
Location | 5,290,524 – 5,290,641 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -32.26 |
Consensus MFE | -20.74 |
Energy contribution | -20.58 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.64 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5290524 117 - 22224390 AAGUUCAAUGACU--UGUCGUCUGUGCAUGAAACUCGCCACCGGGAUCCUUUUGUCGGAUGAGACACAAAAUGGGAAAUGGACUUCCUUGUCAUAUUUCCGAUU-UGCGACAACAAGCAA ........((.((--(((.((((((((......((((....))))((((.......))))..).))))((((.((((((((((......))).))))))).)))-)..))).))))))). ( -32.80) >DroSec_CAF1 27840 103 - 1 AAGUUCAAUGACUCUCGUCGUCGGUACGUG--------------GAUCCC-UUGUCGGAUGAGACA-AAAAUGGGAAAUGGACUUCCUUGUCAUAUUUCCGAUU-UGCGACUACAAGCAA ..(((..(((((....))))).(((.((..--------------((((..-(((((......))))-).....((((((((((......))).)))))))))))-..)))))...))).. ( -30.00) >DroSim_CAF1 18666 103 - 1 AAGUUCAAUGACUCUCGUCGUCUGUACGUG--------------GAUCCC-UUGUCGGAUGAGACA-AAAAUGGGAAAUGGACUUCCUUGUCAUAUUUCCGAUU-UGCGACUACAAGCAA .........(((....)))(..((((((..--------------((((..-(((((......))))-).....((((((((((......))).)))))))))))-..))..))))..).. ( -30.80) >DroEre_CAF1 29049 111 - 1 AAGUUCGAUGACU--UGUCGUCUGUGCAAGAAAUUCAUCUCCGGGAUCCU-UUGUCGGAAUAGACA-A--GAGGGAAAUGGAUUUCCUUGUCAUAUUUCCGAUU-GGCGAACUGUAGC-- .((((((....((--((((.((((.(((((..((((.......))))..)-))))))))...))))-)--)..((((((((((......))).)))))))....-..)))))).....-- ( -33.00) >DroYak_CAF1 28872 112 - 1 AAGUUCGAUGACU--UGUCGUCUGCACAUGAAACUCGUCUUCGGCAUCCU-UUGUCGGAUUAGACA-A--AGGGGAAAUGGACUUCCUUGUCAUAUUUCCGAUUUUGCGACUACAAGC-- ...........((--(((.(((.(((..........(.(....))..(((-(((((......))))-)--)))((((((((((......))).))))))).....)))))).))))).-- ( -34.70) >consensus AAGUUCAAUGACU__UGUCGUCUGUACAUGAAA_UC__C__CGGGAUCCU_UUGUCGGAUGAGACA_AAAAUGGGAAAUGGACUUCCUUGUCAUAUUUCCGAUU_UGCGACUACAAGCAA ..((.(((((((....))))).)).)).................((((....((((......)))).......((((((((((......))).)))))))))))..((........)).. (-20.74 = -20.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:48 2006