Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,290,102 – 5,290,213 |
Length | 111 |
Max. P | 0.977728 |
Location | 5,290,102 – 5,290,213 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -24.62 |
Energy contribution | -26.02 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.17 |
Mean z-score | -2.95 |
Structure conservation index | 0.63 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5290102 111 - 22224390 AUGAAGUGCGCCCACUUCAGCAGCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCCUGGAUCCU-AGGGAUAAAGCCAC-------CAAGGAUAUCGGGCGACUUCGA .((((((.(((((......((.(((..((((((.............))))))))).))(-(((((((((.......-.))))))))))...-------..........))))))))))). ( -36.72) >DroSec_CAF1 27440 112 - 1 AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCC-GAGUCAU-GGAGGCGAAGCCAC-CGCCC-CAAGGAUAUCGGGCGACUUCAA .((((((.(((((......---((...((((((.............))))))....)).-...(((((-......(-((.((((.......-)))))-)).)))))..))))))))))). ( -39.32) >DroSim_CAF1 18260 112 - 1 AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCC-GAGUCCU-GGAGGCGAAGCCAC-CGCCC-CAAGGAUAUCGGGCGACUUCAA .((((((.(((((......---((...((((((.............))))))....)).-........-(((((((-((.((((.......-)))))-).))))).))))))))))))). ( -41.82) >DroEre_CAF1 28667 114 - 1 AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGCAAACUGUAGCGAUUUUGCCC-GAGUCUU-GGAGGCGAAGUUAC-CGCCCCACAGGACAUCGGGCAACUUACA .(((((((....)))))))---..(((...........)))(((((((........)))))))(((((-(((((((-((.((((.......-)))).).)))))).)))))))....... ( -41.60) >DroYak_CAF1 28487 105 - 1 AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACAGUAGCG-UUUUGUCC-GUGUCUUUGAAGGCGUAGUUGCCCGCCCCCAAGGACAUCGA---------- .(((((((....)))))))---((..(((((((.............)))))))...)).-.....((.-(((((((((..((((........))))..))))))))).))---------- ( -34.92) >consensus AUGAAGUGCGCCCACUUCA___GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG_UUUUGUCC_GAGUCCU_GGAGGCGAAGCCAC_CGCCC_CAAGGAUAUCGGGCGACUUCAA .(((((((....)))))))...((...((((((.............))))))....))....((((((...(((((....((((........))))....)))))...))))))...... (-24.62 = -26.02 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:47 2006