Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,288,491 – 5,288,592 |
Length | 101 |
Max. P | 0.660839 |
Location | 5,288,491 – 5,288,592 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -38.83 |
Consensus MFE | -21.62 |
Energy contribution | -22.88 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.11 |
Mean z-score | -2.32 |
Structure conservation index | 0.56 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5288491 101 + 22224390 UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGCG-------------------CGCACAUAGGGGCGAAUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGUCAGGAA ......((.((((...(((.(((.((.(((((((((..-------------------....))))))))))).))).)))..(((....)))..(((((......)))))..)))).)). ( -34.80) >DroSec_CAF1 25750 118 + 1 UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGCGCAGCCACGCCCACCC-UGGCGCGCAUGGAGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGUCAGCCA .(((.....((((...(((.(((.((.(((.((((((((.((((.(.....).-)))))))))))).))))-)))).)))..(((....)))..(((((......)))))..))))))). ( -41.10) >DroEre_CAF1 26986 119 + 1 UGGUAAUCAUGAUUUGAGCGCUAAUCUGUCCCCAAGAGCUGACACGCCCACGGGGGGCGAGCAUGGAGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACUCGACAGGAA ((((..(((.....)))..)))).((((((((((...(((..(((((((.....)))))....))..))).-.)))).....(((....))).((((((......)))))).)))))).. ( -44.00) >DroYak_CAF1 22885 116 + 1 UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCC---GAGCAGCCACGCCCACUGGCGGCGAGCAUGGCGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACGCGACAGGAA .................((((.......((((---(.((.(((((((((....).))))....)))).)).-.)))))....(((....)))..(((((......)))))))).)..... ( -35.40) >consensus UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGAGCAGCCACGCCCAC_G__GGCGAGCAUGGAGGCG_AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGACAGGAA ................(((.(((...((((.(((((........((((.......))))..))))).))))..))).)))..(((....)))..(((((......))))).......... (-21.62 = -22.88 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:43 2006