Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,284,818 – 5,284,926 |
Length | 108 |
Max. P | 0.681168 |
Location | 5,284,818 – 5,284,926 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.29 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -23.45 |
Energy contribution | -23.20 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 0.83 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5284818 108 + 22224390 ------UGGCAGGACGAGUGCAUCGUUCUUUAUGCCAUGCAUAAAUUACGUGCCACCAGCAAGGACUUUUCACUUUGUUAACUUUGUGAAAAUUGCAUAAACAGCCAGGGAAAC------ ------((((.....(.(((((.(((..(((((((...)))))))..))))).)))).((((....(((((((...(....)...))))))))))).......)))).......------ ( -28.10) >DroSec_CAF1 21711 108 + 1 ------UGGCAGGACGAGUGCAUCGUUCUUUAUGCCAUGCAUAAAUUACGUGCCACCAGCAAGGACUUUUCACUUUGUUAACUUUGCGAAAAUAGCAUAAACAGACAGGGCAAC------ ------(((((((((((.....))))))(((((((...))))))).....)))))(((((((((........))))))).....(((.......)))..........)).....------ ( -27.00) >DroEre_CAF1 21639 113 + 1 UCGUGCUGGCAGGACGAGUGCAUCGUUCUUUAUGCCAUGCAUAAAUUACGUGCCACCAGCAAGGACUUUUCACUUUGUUAACUUUGCGAAAAUUGCAUAAACACACACACAUA------- ..(((((((((((((((.....))))))....))))).)))).......(((.....(((((((........))))))).....(((((...)))))....))).........------- ( -27.50) >DroYak_CAF1 18447 118 + 1 --GACGUGGCAGGACGAGUGCAUCGUUCUUUAUGCCAUGCAUAAAUUACGUGCCACCAGCAAGGACUUUUCACUUUGUUAACUUUGUGAAAAUUGCAUAAACACACACAUACACACACAG --...((((((((((((.....))))))(((((((...))))))).....))))))..((((....(((((((...(....)...)))))))))))........................ ( -29.80) >consensus ______UGGCAGGACGAGUGCAUCGUUCUUUAUGCCAUGCAUAAAUUACGUGCCACCAGCAAGGACUUUUCACUUUGUUAACUUUGCGAAAAUUGCAUAAACACACACAGAAAC______ ......(((((((((((.....))))))(((((((...))))))).....)))))..(((((((........))))))).....(((.......)))....................... (-23.45 = -23.20 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:41 2006