Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,284,491 – 5,284,609 |
Length | 118 |
Max. P | 0.609679 |
Location | 5,284,491 – 5,284,609 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.10 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -18.49 |
Energy contribution | -19.83 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.10 |
Mean z-score | -1.69 |
Structure conservation index | 0.64 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5284491 118 - 22224390 UUUAUCCUUUAUCCAGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGACGACAGGAUUAGAAACUGUGCAGCCAUAGAAA ...............(((((...((((.....))))..)))))((((((....((((.((((((((...(((..((......))..)))...)))))))).))))))))))....... ( -33.50) >DroSec_CAF1 21423 118 - 1 UUUAUCCUUUAUCCUGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCUGCUUUUAAUUGAAUCAAAGAGACUUAUCGUCGGCAGGAUUAGAAGAUGUGCAGCCAUAGAAA ..((((.(((((((((((((....((((((..(((((....(((((.......)))))....))))))))))).((......))))).)))))).)))).)))).............. ( -32.10) >DroEre_CAF1 21347 93 - 1 UU-------UAUCCUGUGACUGUAUUGAUUACCAAUUUGUUGCGACUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGUUGGCAG-----------------GACU-GAAA ((-------(((((((((((....((((((..(((((.((((((........))))))....))))))))))).((......))))).))))-----------------)).)-))). ( -21.20) >consensus UUUAUCCUUUAUCCUGCGACUGUAUUGAUUACCAAUUUGUUGCGGCUGCCACUGCAGCUUUUAAUUGAAUCGAAGAGACUUAUCGUCGGCAGGAUUAGAA__UGUGCAGCCAUAGAAA ...........(((((((((....((((((..(((((.(((((((......)))))))....))))))))))).((......)))))).)))))........................ (-18.49 = -19.83 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:40 2006