Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 659,787 – 659,903 |
Length | 116 |
Max. P | 0.979680 |
Location | 659,787 – 659,903 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -46.75 |
Consensus MFE | -36.11 |
Energy contribution | -35.67 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.41 |
Mean z-score | -2.38 |
Structure conservation index | 0.77 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 659787 116 + 22224390 CUAAAUUCAUCUCUGCACGCACCUUGCGGAGAGCAAGGCAGUCAAUGAUGCUAUGACUCUGCCAAGUGACCUCCAGGUCGGCGGGGAUUGGUGUUCCCUCUGACGCCAAGCAGCCC ............((((.....((((((((((((((.((((........)))).)).)))).))...(((((....))))))))))).((((((((......))))))))))))... ( -43.20) >DroSec_CAF1 9862 116 + 1 CAAAAUUCAUCUCAGCACGCACUUUGCGGAGAUCAAGGCAGUCAAUGCUGCUAUGAUUCUGCCAGGCGACCUCCAUGUCGGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC ......((..((((((.(((.((..((((((.(((.((((((....)))))).))))))))).)))))........(((((.(((((......))))).)))))))))))..)).. ( -48.70) >DroSim_CAF1 5493 116 + 1 CCAAAUUCAUCUCAGCACGCACUUUGCGGAGAUCAAGGCAGUCAAUGCUGCUAUGACUCUGCCAGGCGACCUCCAGGUCAGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC ......((..((((((.(((.((..((((((.(((.((((((....)))))).))))))))).)))))........(((((.(((((......))))).)))))))))))..)).. ( -51.70) >DroEre_CAF1 5131 116 + 1 CGAAGUCCAUCUGACCACGCACCCUGCGGGGAUCACGGCAGCCGGUGAGGCUAGGACUUUGCCAGAUGACCUCCAGCUUAGCCGGGAUUGGUUUCUCGUCUGGCGCUUGGUAGUCC ((((((((...(((((.(((.....))).)).)))....((((.....)))).))))))))......(((..(((((((((.(((((......))))).)))).)).)))..))). ( -43.40) >consensus CAAAAUUCAUCUCAGCACGCACCUUGCGGAGAUCAAGGCAGUCAAUGAUGCUAUGACUCUGCCAGGCGACCUCCAGGUCAGCGGGGAUGGGUUUCCCUUCUGACGCUGAGCAGACC ..........((((((.(((.....((((((.(((.((((((....)))))).)))))))))...)))........(((((.(((((......))))).)))))))))))...... (-36.11 = -35.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:36 2006