Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,283,115 – 5,283,235 |
Length | 120 |
Max. P | 0.602726 |
Location | 5,283,115 – 5,283,235 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.03 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -20.79 |
Energy contribution | -21.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.83 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5283115 120 - 22224390 CCAUGCUCAAUGGCAAUUUAAUGGGCACCGCCAGUUCGAAGAGUGAUUCUUUUCAAAAACAAUCGAGAAGCGAUUGACCAGCGCAAUAAAAGCCAUUAAAAAGAACAUUAAAAGCGAUUC ........((((((..((((.((.((...........((((((.....)))))).....((((((.....))))))....)).)).)))).))))))....................... ( -25.40) >DroSec_CAF1 20023 119 - 1 CCAUGCUCAAUGGCAAUUUAAUGGGCAC-GCCAGUCCGAAGAGUGAUUCUUUUCAAAAACAAUCGAGAAGCGAUUGACCAGCGCAAUAAAAGCCAUUAAAAAGAACAUUAAAAGCGAUUC ........((((((..((((.((.((..-........((((((.....)))))).....((((((.....))))))....)).)).)))).))))))....................... ( -25.40) >DroEre_CAF1 19780 115 - 1 CCUCGCCCGAUGGCAAUUUAAUGACC---UCCAGCCCGAAGAGUGAUUCUUUUCAAAAACAAUCGAGAAGCGAUUGACCAGCGCAAUAAAAGCCAUUAAAAAGAACAUUAAAAGCGAU-- ..((((..((((....(((((((...---....((..((((((.....)))))).....((((((.....))))))....))((.......))))))))).....))))....)))).-- ( -23.90) >DroYak_CAF1 16602 117 - 1 CCAUGCUCAAUGGCAAUUUAAUGGGC---UUCAGUUCGCAGAGUGAUUCUUUUCAAAAACAAUCAAGAAGCGAUUGACCAGCGCAAUAAAAGCCAUUAAAAAGAACAUUAAAAGCGAUGC ........((((((..((((.((.((---((((((.(((....(((((.(((....))).)))))....))))))))..))).)).)))).))))))........((((......)))). ( -25.60) >consensus CCAUGCUCAAUGGCAAUUUAAUGGGC___GCCAGUCCGAAGAGUGAUUCUUUUCAAAAACAAUCGAGAAGCGAUUGACCAGCGCAAUAAAAGCCAUUAAAAAGAACAUUAAAAGCGAUUC ........((((((..((((.((.((...........((((((.....)))))).....((((((.....))))))....)).)).)))).))))))....................... (-20.79 = -21.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:39 2006