Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,281,906 – 5,282,024 |
Length | 118 |
Max. P | 0.596638 |
Location | 5,281,906 – 5,282,024 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.75 |
Mean single sequence MFE | -18.87 |
Consensus MFE | -16.32 |
Energy contribution | -16.65 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.87 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5281906 118 + 22224390 ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA-AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCAG-CACACACACACA ......(((((((...((((((.((((((((((.((((....))))))))))....)))).))))))-.........)))))))......(((............))-)........... ( -19.80) >DroSec_CAF1 18832 119 + 1 ACGACAGGAAAUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA-AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCAUCCACACACACACA ......(((..((((.((((((.((((((((((.((((....))))))))))....)))).))))))-...))))..........((....)).....)))................... ( -16.10) >DroYak_CAF1 15096 108 + 1 ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAACAUUUUCAACCACUUCCCAAUCCCCUACUCCC----------CCCACCACA-- ......(((((((..(((((((.((((((((((.((((....))))))))))....)))).))))))).........)))))))...............----------.........-- ( -20.70) >consensus ACGACAGGAAGUGAAGUUGUCGAAAGUGAAUUUGCAUAAACGUAUGAAAUUUUAAUAUUUACGACAA_AUUUUCAACCACUUCCCAGCCAGCUACCCAUCCAUCCA__CACACACACACA ......(((((((...((((((.((((((((((.((((....))))))))))....)))).))))))..........))))))).................................... (-16.32 = -16.65 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006