| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,281,645 – 5,281,751 |
| Length | 106 |
| Max. P | 0.999779 |
| Location | 5,281,645 – 5,281,751 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.23 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -11.07 |
| Energy contribution | -12.30 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.26 |
| Mean z-score | -4.20 |
| Structure conservation index | 0.48 |
| SVM decision value | 4.06 |
| SVM RNA-class probability | 0.999779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5281645 106 - 22224390 CAAUUUACAUUUACAUUCCCAAGAGCAACAGCUGCACUUAAUAAUACUACAUACAUACAUAUGUAUGUUUGUGUGCAGUUGUAUG----UUUUUCAGUGUGUUUCUCUCA ...........((((((...(((((((((((((((((...........(((.((((((....)))))).))))))))))))).))----))))).))))))......... ( -30.30) >DroSec_CAF1 18612 92 - 1 CACUUUACUU--GCUUCCCUAAGAGAGACACAUACACCUAAUAAUACUACAUAUG------------UAUAUGUGCAGUUGUAUG----CUUUUGACUGUUUUUCUCUCA ..........--..........((((((((((((.((.((...........)).)------------).))))))((((((....----....))))))....)))))). ( -16.70) >DroSim_CAF1 13382 92 - 1 CAAUUUACAU--GUUUCCCUAAGAGAGA----UACACUUAAUAAAACUACAUAUU------------UAUGUAUGCACUUAAAUGCACACUUUUAAGUGUUUUUCUCUCA ..........--..........((((((----.((((((((......(((((...------------.)))))((((......)))).....))))))))...)))))). ( -22.40) >consensus CAAUUUACAU__GCUUCCCUAAGAGAGACA__UACACUUAAUAAUACUACAUAUA____________UAUGUGUGCAGUUGUAUG____CUUUUAAGUGUUUUUCUCUCA ......................((((((.....((((((((....(((.((((((..............)))))).))).............))))))))...)))))). (-11.07 = -12.30 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006