Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,278,229 – 5,278,349 |
Length | 120 |
Max. P | 0.965643 |
Location | 5,278,229 – 5,278,349 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -20.62 |
Energy contribution | -20.70 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.20 |
Mean z-score | -2.53 |
Structure conservation index | 0.56 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5278229 120 + 22224390 ACGCAGAAUGUUGACUGCAUUCUCUCCUUCAAGUGGGUACAGUUUGUGGUCGCAACUGUUCUCAGCUGCGGAGGGGAAAGCCUGACAAUCAGAGAUCCAGCAUUCUUGUAAUUAAAUGUA ..(((((((((((...((.((.((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))))(((.....))).....)))))))).)))........... ( -38.30) >DroSec_CAF1 15291 107 + 1 ACGCAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUUUUGUAAAC------- ..((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))...((.....))........))).))))))....------- ( -33.20) >DroSim_CAF1 9945 107 + 1 ACACAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGAAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAAC------- ..((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))..(((.....))).......))).))))))....------- ( -39.50) >DroEre_CAF1 14880 113 + 1 ACGAAGGAUGUUGGCUGAAUUUUCUCCUUCAAGUGGGUACAUUUUGUGGCUGCAAGUGUUCUCAGCAACGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUCUGUAAAAA------- ....((((((((((......(((((((((((((((....))))).((.((((..((....)))))).))))))))))))...((.....)).....)))))))))).......------- ( -32.40) >DroYak_CAF1 10871 112 + 1 -CGAAGGAUGCGGACUGGAUGUUCUCCUUCAAGUGGGCACACUUUGUGGCUGAAACUGUUCUCAGCAAUGGAGGGGAAGUUCCAACUAUCCGAUAUCCAGAAUUCUGUUAAAA------- -....(((((((((.((((..((((((((((((((....)))).....(((((........)))))..))))))))))..))))....)))).)))))...............------- ( -40.50) >consensus ACGCAG_AUG__GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAAA_______ ....................((((((((((..((((.(((.....))).))))..(((....)))....))))))))))......................................... (-20.62 = -20.70 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006