Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 659,430 – 659,550 |
Length | 120 |
Max. P | 0.601144 |
Location | 659,430 – 659,550 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -30.41 |
Energy contribution | -31.63 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.36 |
Structure conservation index | 0.74 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 659430 120 + 22224390 UAGUCAUUUUCCUCGCGGAGGUUGCCUUGUCAAUAGUCAAUUUCCUCGCGGAGGUUGCCUUGUCAAUAGUCAAUUUCCUCGCGGAGGUUCCCUUGUCAAUAGUCAAUUUCCUCGCGUUGG ..........((.(((((((((((.((((.((..((..(((((((.((.((((((((.((.......)).)))))))).)).)))))))..)))).))..)).))))))))..)))..)) ( -35.90) >DroSec_CAF1 9505 120 + 1 UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU ........((((..(((((((((.(.(((.(((.((.(((.((((.((.((((((((.(((....)))..)))))))).)).)))).)))))))).))).).....))))))))))))). ( -43.30) >DroSim_CAF1 5136 120 + 1 UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU ........((((..(((((((((.(.(((.(((.((.(((.((((.((.((((((((.(((....)))..)))))))).)).)))).)))))))).))).).....))))))))))))). ( -43.30) >consensus UAGUCAAUUUCCUUGCGGAGGUUGCCUUGUCAAUGGUCAAGUUCCUCGCGGAGUUUGCCUUGUCAAAGCUCAAAUUCCUCGCGGAGGUUGCCUUGUCAAUGAUCAAGAUCUUCGCGGAGU ..(.((((((((....)))))))).)(((.(((.((.((((((((....))))))))))))).)))..........(..(((((((((...((((........)))))))))))))..). (-30.41 = -31.63 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:35 2006