Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,270,663 – 5,270,766 |
Length | 103 |
Max. P | 0.726685 |
Location | 5,270,663 – 5,270,766 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.88 |
Mean single sequence MFE | -48.20 |
Consensus MFE | -34.90 |
Energy contribution | -36.10 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.30 |
Mean z-score | -1.39 |
Structure conservation index | 0.72 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5270663 103 - 22224390 CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUUUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGAGCCAUGGCUUGAGCUUG------ .((((.(((((.(((((.(((....))).)))))))))).)))).((((.((((.(((....)))..))))((((((------..(((....)))..))))))))))..------ ( -46.70) >DroSec_CAF1 7601 103 - 1 CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGUGCCAUGGCCUGGGACUG------ .((((.(((((.(((((.(((....))).)))))))))).))))..((((((((.(((....)))..)))).))))(------..((((........))))..).....------ ( -49.10) >DroSim_CAF1 2836 103 - 1 CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC------UGGGCCUGUGCCAUGGCCUGGGCCUG------ .((((.(((((.(((((.(((....))).)))))))))).))))......((((.(((....)))..))))((((((------..((((........))))..))))))------ ( -55.30) >DroYak_CAF1 2949 109 - 1 CCUCGCACUGGUAACGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGCACGGGCC------UGGGCUUGCGCCAAGGCUUGGGCCUGGCUCUG .((((.(((((...(((.(((....))).)))..))))).)))).(((..((((.(((....)))..))))((((((------..(((((......)))))..)))))))))... ( -51.90) >DroMoj_CAF1 3700 95 - 1 CCUCGCACUGAUAGCGCGGCGCAAUCGUAGUGCUCCAGUCCGAAUAGCUUUGGGUGCGCACACGCUUCGAGGGCGCCGCAUUCUUGGCCUGCUCC-------------------- ....((((..(.((.(((((((..(((..((((..((.((((((....)))))))).))))......)))..))))))).)).)..)..)))...-------------------- ( -33.30) >DroAna_CAF1 2836 108 - 1 CCUCGCAUUGGUAGCGCGGGGCAAUGGUGGUGCUCCAGUCUGAGUAGCUCUGGGUGCGCACUCGUUUCGCCCUGGCG------CUGGCCUGGGCCUGGGCUUGGGCCUGGGUGA- ..((((......((((((((((((((((((..(.((((.((....))..)))))..).))).))))..))))).)))------))((((..(((....)))..))))...))))- ( -52.90) >consensus CCUCGCACUGGUAGCGCGGCGCUAUCGUGGUGCUCCAGUCCGAGUAGCUCUGCGUGCGCACUCGCUUCGUACGGGCC______UGGGCCUGCGCCAUGGCUUGGGCCUG______ .((((.(((((.(((((.(((....))).)))))))))).))))..((((.....(((....)))...(((((((((........)))))))))........))))......... (-34.90 = -36.10 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:23 2006