Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,261,261 – 5,261,368 |
Length | 107 |
Max. P | 0.947051 |
Location | 5,261,261 – 5,261,368 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.01 |
Mean single sequence MFE | -20.08 |
Consensus MFE | -18.52 |
Energy contribution | -18.52 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.92 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5261261 107 + 22224390 GUGUUAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU (((((..((...((((((...........))))))(((.....)))))...))))).........................((((.(((((....))))).)))).. ( -18.70) >DroSec_CAF1 16921 107 + 1 GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU (((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -18.60) >DroSim_CAF1 16579 107 + 1 GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU (((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -18.60) >DroEre_CAF1 17685 107 + 1 GUGUCAACCACUUAGAGAAUUAGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU (((.....))).((((((.(((....))))))))).((((((........)))))).........................((((.(((((....))))).)))).. ( -21.90) >DroYak_CAF1 17570 107 + 1 GUGUUAACCACUUAGAGAGUUAGAAAUAGUCUCUGCGUAUUCAACGAAAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGACAUCUAAUCAGCUAU (((.....))).((((((.(((....))))))))).((((((..(....))))))).........................((((.(((((....))))).)))).. ( -22.60) >consensus GUGUCAACCACUUAGAGAAUUUGAAAUAGUCUCUGCGUAUUCAACGGGAGGAAUACUACCAUAAAAUCAUCAAAUCAAGUCAGCUAAUUAGCCAGCUAAUCAGCUAU (((.....))).((((((...........)))))).((((((........)))))).........................((((.(((((....))))).)))).. (-18.52 = -18.52 + -0.00)
Location | 5,261,261 – 5,261,368 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.01 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -25.02 |
Energy contribution | -24.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.99 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5261261 107 - 22224390 AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUAACAC .(((((((((((....)))))))))))....................((.((.....)).))(((((.(((..(((((...........)))))..))).))))).. ( -25.60) >DroSec_CAF1 16921 107 - 1 AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC .(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40) >DroSim_CAF1 16579 107 - 1 AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC .(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40) >DroEre_CAF1 17685 107 - 1 AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCUAAUUCUCUAAGUGGUUGACAC .(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... ( -25.40) >DroYak_CAF1 17570 107 - 1 AUAGCUGAUUAGAUGUCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUUUCGUUGAAUACGCAGAGACUAUUUCUAACUCUCUAAGUGGUUAACAC .(((((((((((....))))))))))).......(((((.((((.......((((((........))))))..(((((...........))))))))).)))))... ( -24.80) >consensus AUAGCUGAUUAGCUGGCUAAUUAGCUGACUUGAUUUGAUGAUUUUAUGGUAGUAUUCCUCCCGUUGAAUACGCAGAGACUAUUUCAAAUUCUCUAAGUGGUUGACAC .(((((((((((....)))))))))))......((((...((((.((((.((.....)).)))).))))...))))((((((((..........))))))))..... (-25.02 = -24.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:16 2006