Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,255,729 – 5,255,819 |
Length | 90 |
Max. P | 0.637519 |
Location | 5,255,729 – 5,255,819 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 90.14 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -16.02 |
Energy contribution | -15.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.46 |
Structure conservation index | 0.81 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5255729 90 + 22224390 GAUGCAGCAUUGGUGGCUCCAUUUCCACUUCCAUUUGAGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU ((.(((((...(((((........)))))((.....)))))))...))..((((((((..................))).)))))..... ( -18.07) >DroSec_CAF1 11579 84 + 1 GAUGCAGCAUUGGUGGCUCCAUU------UCCAUUUGGGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU ..........(((..((.(((..------......)))))..)))..(((((((((((..................))).))))).))). ( -20.17) >DroSim_CAF1 11209 90 + 1 GAUGCAGCAUUGGUGGCUCCAUUUCCAUUUCCAUUUGGGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU ((.(((((..(((.....)))...(((........))))))))...))..((((((((..................))).)))))..... ( -19.27) >DroEre_CAF1 11956 84 + 1 GAUGCAGCAUUGGUGGUUCCAUU------UCCAUUCGCGCUGCCAUUUGAUGGCUGAACUCCUUUCAAUUCCAUUAGUGCAACCACUUGU ......((((((((((.......------............(((((...)))))((((.....))))...)))))))))).......... ( -19.10) >DroYak_CAF1 12040 84 + 1 GAUGCAGCAUUGGUGGUUCCAUU------UCCAUUGGCGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUGUAUCCACUUGU (((((((...(((..((.(((..------.....))).))..)))...(((((.((((.....))))...))))).)))))))....... ( -22.50) >consensus GAUGCAGCAUUGGUGGCUCCAUU______UCCAUUUGCGCUGCCAUUCGAUGGCUGAACUCCUUUCAAUUCCAUUUUUCUAGCCACUUGU ((.(((((.(..((((..............))))..).)))))...))(((((.((((.....))))...)))))............... (-16.02 = -15.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006