Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 653,282 – 653,399 |
Length | 117 |
Max. P | 0.627635 |
Location | 653,282 – 653,399 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.52 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -29.31 |
Energy contribution | -30.68 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.60 |
Structure conservation index | 0.71 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 653282 117 - 22224390 AUGAGCAGCCGAGUUGUUCUUGAUGUUCGUGUCACGAAU-GAGCAAGAUAGGCACGAAAGUCCCUUG--UUACAUGGGUGGAUGCCGAAAUUAAGAGGCACGCGGGCAUCACUAUGAAAG ..(((((((...))))))).(((((((((((((((..((-(((((((...((.((....))))))))--)).)))..)))).((((..........)))))))))))))))......... ( -42.30) >DroSim_CAF1 17644 119 - 1 AUGAGCAGCCUAGUUGUUCUUGAUGUUCGUGUCACGAAU-UAGCACGAUAGGCACGAAAGUCCCUUGUAUUACAUGGGUGGGUGCCGAAAUUCAGAGGCACGCGGGCAUCACUAUGGAAG ..(((((((...))))))).((((((((((.((((..((-(((.(((..(((.((....)).)))))).))).))..))))(((((..........)))))))))))))))......... ( -37.70) >DroEre_CAF1 11174 119 - 1 AUGAGCAACCGCGUUGAUCUAG-UGUUCGUGCCACGACUUGAGCACGAUAGGCCCGAAAGUCCCUUGUAUUACAUGGGUGCGUGCCGAAAAUGAGCGGCACGCGGGCAUCUCCAUUGAAG ..((.((((...)))).))(((-((.((((((((.....)).))))))...((((......(((.((.....)).))).((((((((........)))))))))))).....)))))... ( -43.10) >DroYak_CAF1 11510 119 - 1 AUGAGCGACCACGUUGUUCUUG-UGUGCGUGUCACGAUUUUAUCACGAUAGGCACGAAAGUCCCUUGCAUUACAUGGGCGCGUGCCGAAAUGGAGAGGCACGCGGGCAUCUCUGUCGAAG ..(((((((...))))))).((-(.((((((((..(((...)))......((((((...((((..((.....)).)))).))))))..........)))))))).)))............ ( -40.90) >consensus AUGAGCAACCGAGUUGUUCUUG_UGUUCGUGUCACGAAU_GAGCACGAUAGGCACGAAAGUCCCUUGUAUUACAUGGGUGCGUGCCGAAAUUGAGAGGCACGCGGGCAUCACUAUGGAAG ..(((((((...)))))))..((((((((((((.................)))))......(((.((.....)).))).(((((((..........)))))))))))))).......... (-29.31 = -30.68 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:33 2006