Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,225,278 – 5,225,376 |
Length | 98 |
Max. P | 0.998505 |
Location | 5,225,278 – 5,225,376 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -15.84 |
Energy contribution | -16.12 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.22 |
Mean z-score | -2.36 |
Structure conservation index | 0.58 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5225278 98 + 22224390 GCAAUAGAGAACAA--AACCCCAAUCGAUU---UGCAAAUUUUAUCGGUUGGGGCUCGUUCUUU--UG-----GAACUUAGAAA----UACGUAGACAGCAUGGGAGCAUCUAU .(((..((((((..--..(((((((((((.---..........)))))))))))...)))))))--))-----...........----...(((((..((......)).))))) ( -26.40) >DroSec_CAF1 1713 98 + 1 GCAAUAGAGAACAA--AACCCCAACCGAUU---UGCAAUUUUUAUCGGUUGGGGCUCGUUCUUU--UG-----GAACUUAGAAA----UACGUAGACAGCAUGGGAGCAUCUAU .(((..((((((..--..(((((((((((.---..........)))))))))))...)))))))--))-----...........----...(((((..((......)).))))) ( -29.00) >DroEre_CAF1 1727 98 + 1 GCAAUAGAAAACAA--AACCCCAACCGAUU---UGCAAAUUUUAUCGGUUGGGGAUCGUUCUUU--UG-----GAACUUAGAAA----UAUGUAGAUAGCAUGGGAGCAUUUAU ((............--..(((((((((((.---..........))))))))))).((((((...--..-----)))).......----(((((.....))))).))))...... ( -28.00) >DroYak_CAF1 1781 98 + 1 GCAAUUGAAAACAA--AACCCCAACCGAUU---UGCAAAUUUGAUCGGUUGGUGCUUGUUCUUU--UG-----AAAUUUAGAAA----UACGUAGACAGCAUGGGAGCAUCUAU (((.(((....)))--....((((((((((---.........))))))))))))).((((((..--((-----...((((....----....))))...))..))))))..... ( -23.60) >DroAna_CAF1 3521 109 + 1 GCAAUAGAAGAGGAGGAAGCUCUGCUGAUUCUAUGCAAA-----UCCGCCGAGGAUCCUCCUCUGUUAAAAAAAAAUCUAGAGAACUGUAUGUAGAGAGCAUGGGAGCAUAUAU ((..(((.(((((((((..(((.((.((((.......))-----)).)).)))..))))))))).)))........((((.(........).))))..))(((....))).... ( -30.60) >consensus GCAAUAGAAAACAA__AACCCCAACCGAUU___UGCAAAUUUUAUCGGUUGGGGCUCGUUCUUU__UG_____GAACUUAGAAA____UACGUAGACAGCAUGGGAGCAUCUAU ..................(((((((((((..............))))))))))).....................................(((((..((......)).))))) (-15.84 = -16.12 + 0.28)
Location | 5,225,278 – 5,225,376 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -22.20 |
Energy contribution | -22.44 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.31 |
Mean z-score | -3.06 |
Structure conservation index | 0.82 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5225278 98 - 22224390 AUAGAUGCUCCCAUGCUGUCUACGUA----UUUCUAAGUUC-----CA--AAAGAACGAGCCCCAACCGAUAAAAUUUGCA---AAUCGAUUGGGGUU--UUGUUCUCUAUUGC .(((((((......)).)))))....----...........-----..--..((((((((((((((.((((..........---.)))).)))))).)--)))))))....... ( -26.20) >DroSec_CAF1 1713 98 - 1 AUAGAUGCUCCCAUGCUGUCUACGUA----UUUCUAAGUUC-----CA--AAAGAACGAGCCCCAACCGAUAAAAAUUGCA---AAUCGGUUGGGGUU--UUGUUCUCUAUUGC .(((((((......)).)))))....----...........-----..--..(((((((((((((((((((..........---.))))))))))).)--)))))))....... ( -32.80) >DroEre_CAF1 1727 98 - 1 AUAAAUGCUCCCAUGCUAUCUACAUA----UUUCUAAGUUC-----CA--AAAGAACGAUCCCCAACCGAUAAAAUUUGCA---AAUCGGUUGGGGUU--UUGUUUUCUAUUGC ......((......))..........----...........-----..--..(((((((.(((((((((((..........---.)))))))))))..--)))))))....... ( -25.00) >DroYak_CAF1 1781 98 - 1 AUAGAUGCUCCCAUGCUGUCUACGUA----UUUCUAAAUUU-----CA--AAAGAACAAGCACCAACCGAUCAAAUUUGCA---AAUCGGUUGGGGUU--UUGUUUUCAAUUGC .(((((((......)).)))))....----...........-----..--..(((((((((.(((((((((..........---.))))))))).).)--)))))))....... ( -23.20) >DroAna_CAF1 3521 109 - 1 AUAUAUGCUCCCAUGCUCUCUACAUACAGUUCUCUAGAUUUUUUUUUAACAGAGGAGGAUCCUCGGCGGA-----UUUGCAUAGAAUCAGCAGAGCUUCCUCCUCUUCUAUUGC ......((......))..................................(((((((((..(((.((.((-----(((.....))))).)).)))..)))))))))........ ( -28.40) >consensus AUAGAUGCUCCCAUGCUGUCUACGUA____UUUCUAAGUUC_____CA__AAAGAACGAGCCCCAACCGAUAAAAUUUGCA___AAUCGGUUGGGGUU__UUGUUUUCUAUUGC .(((((((......)).)))))..............................(((((((((((((((((((..............))))))))))))...)))))))....... (-22.20 = -22.44 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:58 2006