Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,213,850 – 5,213,953 |
Length | 103 |
Max. P | 0.897199 |
Location | 5,213,850 – 5,213,953 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.88 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -16.37 |
Energy contribution | -16.05 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.26 |
Mean z-score | -1.91 |
Structure conservation index | 0.63 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5213850 103 - 22224390 UUUUAAUUCCGUAAAAUUGUAAACAUGUUUUAAAC----------------CCUAAGAUACA-AAAUCACGAUUAUAUUCCUCUGUGUAUGUGCGUUUGUGUGCGCUGAGGCAUGGAAAU ......((((((..((((((.....(((((((...----------------..)))))))..-.....)))))).....((((.(((((..(......)..))))).)))).)))))).. ( -22.30) >DroSec_CAF1 33891 119 - 1 UUUAAAUUCCAUAAAAUUGUAAAAGUGUUUUAACACAUUUUUAAAUAUUUACCUAAGAUACA-AAAUCACGGUUAUUUCCCUCUGUGUAUGUGCGUUUGUGUGCGCUGAGGCAUGGAAAU ......((((((.((((..(((((((((......)))))))))...))))(((...(((...-..)))..)))......((((.(((((..(......)..))))).)))).)))))).. ( -26.70) >DroSim_CAF1 27552 119 - 1 UUUAAAUUCCAAAAAAUUGUAUACGUCUUUUAACACAUUUUUGGGUAUUUAUCUAAGAUACC-AAAUCACGAUUAUUUCCCUCUGUGUAUGUGCGUUUGUGUGCGCUGAGGCAUGGAAAU ......(((((...((((((...............((....))(((((((.....)))))))-.....)))))).....((((.(((((..(......)..))))).))))..))))).. ( -27.30) >DroEre_CAF1 37291 112 - 1 UCGUAAUUCUAUAAAAUCGUGAUCGUAUU--------UUUUUGCGUAUUUUUCUAAGAUACAUAAAUCACAAUUAUUUCCCUCUGUGUAUGUGCGUUUGUGUGCGCUGAGGCAUGGAAAU ......((((((......(((((.(((..--------....)))((((((.....))))))....))))).........((((.(((((..(......)..))))).)))).)))))).. ( -26.40) >DroYak_CAF1 34626 108 - 1 UCUUAAUUCCACAAAGUUGUG----UACG--------UUUUUACGUAUUUAUCUAAACAACAUAAAUCACAAUUAUUCCCCUCUGUGUACGAACGUUUGUGUGCGCUGAGGCAUGGAAAU ......(((((....((((((----((((--------(....))))))........)))))..................((((.(((((((........))))))).))))..))))).. ( -27.10) >consensus UUUUAAUUCCAUAAAAUUGUAAACGUAUUUUAA____UUUUUACGUAUUUAUCUAAGAUACA_AAAUCACGAUUAUUUCCCUCUGUGUAUGUGCGUUUGUGUGCGCUGAGGCAUGGAAAU ......((((((..((((((................................................)))))).....((((.(((((((........))))))).)))).)))))).. (-16.37 = -16.05 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:53 2006