Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 652,693 – 652,813 |
Length | 120 |
Max. P | 0.754250 |
Location | 652,693 – 652,813 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -46.70 |
Consensus MFE | -38.20 |
Energy contribution | -39.53 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.06 |
Mean z-score | -1.93 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 652693 120 + 22224390 CUUCAAGGUACGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCAAGCAGCGUGAGGACUUCAGUGCCCACUUUCCUCUGCUAUGGCGUUCGCUCCUGGACGCUCUGGUGCGCUCUAAUGU ......((..(((((((..((((..((((....(((((.......)))))(((.((((....)).))))).)))).))))...((((((((....)))))))).)))))))..))..... ( -44.80) >DroEre_CAF1 10581 120 + 1 UUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUACAGGUAGAGCAGCGUCAAGACUUCAGCGCCCACUUUCCGCUGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCUAAUGC ......((.((((((((..((..((((.(((((((.....)))))))(((((((.....((((((.........))))))..))))))).....))))..))..)))))))).))..... ( -49.40) >DroYak_CAF1 10931 120 + 1 CUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCGAGCAGCGUCAGGACUUCAGCACCCACUUUCCGCAGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCCAAUGC .......(.((((((((..((.((.(((((((((((((.......)))))...)))))))).))............((((...((.....)).))))...))..)))))))).)...... ( -45.90) >consensus CUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCGAGCAGCGUCAGGACUUCAGCGCCCACUUUCCGCUGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCUAAUGC ......((.((((((((..((.((((((((((((((((.......)))))...))))))))...(((...........)))..)))((((......))))))..)))))))).))..... (-38.20 = -39.53 + 1.34)
Location | 652,693 – 652,813 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -48.40 |
Consensus MFE | -42.81 |
Energy contribution | -41.93 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -1.99 |
Structure conservation index | 0.88 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 652693 120 - 22224390 ACAUUAGAGCGCACCAGAGCGUCCAGGAGCGAACGCCAUAGCAGAGGAAAGUGGGCACUGAAGUCCUCACGCUGCUUGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGUACCUUGAAG ........(((((((((((.(((.((.((((...((....)).(((((.(((....)))....))))).)))).)).)))))(((((.(.....).))))).)))))))))......... ( -47.30) >DroEre_CAF1 10581 120 - 1 GCAUUAGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCAGCGGAAAGUGGGCGCUGAAGUCUUGACGCUGCUCUACCUGUAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAA .((..((.(((((((((.(((.((.((((((....))....(((((.........)))))..........(((((.......)))))....)))))).))).))))))))).)).))... ( -45.20) >DroYak_CAF1 10931 120 - 1 GCAUUGGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCUGCGGAAAGUGGGUGCUGAAGUCCUGACGCUGCUCGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAG .((..(..(((((((((.(((.((.(((((((...(..((((..(.....)..))))..)...)))....(((((.......)))))....)))))).))).))))))))).)..))... ( -52.70) >consensus GCAUUAGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCAGCGGAAAGUGGGCGCUGAAGUCCUGACGCUGCUCGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAG ........(((((((((.(((.((.((((................(((.(((....)))....)))....(((((.......)))))....)))))).))).)))))))))......... (-42.81 = -41.93 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006