Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,198,380 – 5,198,471 |
Length | 91 |
Max. P | 0.996496 |
Location | 5,198,380 – 5,198,471 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.17 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -16.22 |
Energy contribution | -16.71 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.53 |
Structure conservation index | 0.64 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5198380 91 + 22224390 AAGUAGUUAAUAGAAGAAAUUGCAUUGGUUCAAAGUGACCAGACUAGGUGUUGUAAGCACUGUC--------GAAGCUGGUCACAUUGAAGCAUCCGUU---- ..((((((.........))))))..((.(((((.((((((((.((.(((((.....)))))...--------..)))))))))).))))).))......---- ( -28.70) >DroSec_CAF1 19123 90 + 1 AAAUAGUUAAAAGAAGAAACUGCAUAGGCUUAAAGUGACCGGACUU-GUGUUGUAAGCACUGUC--------AAAGCUGGUCACAUUAAAGCAUCAGCU---- .....................((....((((.((((((((((.(((-((((.....))))....--------.))))))))))).)).))))....)).---- ( -22.90) >DroSim_CAF1 12894 89 + 1 AAAUAGU-AAAAGAAGAAACUGCAUAGGCUUAAAGUGACCGGACUU-GUGUUGUAAGCACUGUC--------GAAGCUGGUCACAUUAAAGCAUCAGUU---- .......-.........(((((.....((((.((((((((((.(((-((((.....))))....--------.))))))))))).)).))))..)))))---- ( -24.00) >DroYak_CAF1 19472 99 + 1 GAAUAACUGAACAAAGAAACGGCAGAGUUUUGAAGUGACCAGACUU-GUAAAGUAAGCACUGUCAUUCUUUGGUGGCUGGUCACAUUAAAGCAGCU---UCCU ....................((.((.(((((((.((((((((.(((-(.....))))(((((........))))).)))))))).)))))))..))---.)). ( -25.70) >consensus AAAUAGUUAAAAGAAGAAACUGCAUAGGCUUAAAGUGACCAGACUU_GUGUUGUAAGCACUGUC________GAAGCUGGUCACAUUAAAGCAUCAGUU____ ..........................(.(((((.((((((((.(((.((((.....)))).............))))))))))).))))).)........... (-16.22 = -16.71 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:46 2006