Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,183,097 – 5,183,275 |
Length | 178 |
Max. P | 0.990351 |
Location | 5,183,097 – 5,183,202 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.36 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -12.49 |
Energy contribution | -13.92 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.74 |
Structure conservation index | 0.55 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5183097 105 + 22224390 CUUUUCUAUUAUACCACUUUGAUCCACUAUAUAUUUUAAUAUGUGCAAUAGAU---------------UUGCAUUUAAGGUUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGU ............................((((((....))))))((((.....---------------))))((((((.(((((.(((((((.........)))))))))))).)))))) ( -20.60) >DroSec_CAF1 4398 113 + 1 -------AUUAUACCAUUUUGAUUCACAAUAUGUUUAAAUAUGUGUAAUAGAUUGUUAGCUUUUGCAUUUGCAUUUAAGGUUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGU -------(((((((...(((((..((.....)).)))))...))))))).........((....))......((((((.(((((.(((((((.........)))))))))))).)))))) ( -22.50) >DroEre_CAF1 4379 108 + 1 CUGUUCUAUUAUAUCAUUUUGAUCCAUAA--GAUUGAAGUAUGUG----------UAAGCUUUUCCAUUUGCACAUUAAGUUGAACCUUCGCUCUUACCAUCCUAAGGUCAAUGUUAAGU ..((((.(((.....((((..(((.....--)))..))))(((((----------((((........)))))))))..))).))))(((.((....(((.......)))....)).))). ( -18.60) >DroYak_CAF1 4303 119 + 1 CUUAUCUAUUAUACCAUUGGGAGCUAUAA-ACAAUGCAAUAUGUGUAAUAGAUUGUAAGCUUUUCCAUUUGCAUAUAAAGUUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGU (((((((((((((((((((..........-.)))))......))))))))))(((((.((..........)).))))).(((((.(((((((.........))))))))))))..)))). ( -28.70) >consensus CUUUUCUAUUAUACCAUUUUGAUCCACAA_AUAUUGAAAUAUGUGUAAUAGAU__UAAGCUUUUCCAUUUGCAUAUAAAGUUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGU .......................................(((((((((....................)))))))))..(((((.(((((((.........))))))))))))....... (-12.49 = -13.92 + 1.44)
Location | 5,183,137 – 5,183,235 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -19.19 |
Energy contribution | -20.00 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.10 |
Mean z-score | -2.32 |
Structure conservation index | 0.73 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5183137 98 + 22224390 AUGUGCAAUAGAU---------------UUGCAUUUAAGGUUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGUGCU------U-UCGGGCUGCUUUCUCACACUCUCGUUAAC ....(((...((.---------------..((((((((.(((((.(((((((.........)))))))))))).)))))))).------.-))....))).................... ( -26.90) >DroSec_CAF1 4431 112 + 1 AUGUGUAAUAGAUUGUUAGCUUUUGCAUUUGCAUUUAAGGUUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGUGCU------C-UCG-GCUGCUUUCUCGCACUCUCGUUAAC ..((((...(((..((.((((.........((((((((.(((((.(((((((.........)))))))))))).)))))))).------.-..)-)))))..))).)))).......... ( -32.02) >DroEre_CAF1 4417 103 + 1 AUGUG----------UAAGCUUUUCCAUUUGCACAUUAAGUUGAACCUUCGCUCUUACCAUCCUAAGGUCAAUGUUAAGUGCU------CCUCG-GCUGCUUUCUCAUACUCUCGUUAAC .((((----------.((((....((....((((.(((((((((.((((...............))))))))).)))))))).------....)-)..))))...))))........... ( -18.46) >DroYak_CAF1 4342 119 + 1 AUGUGUAAUAGAUUGUAAGCUUUUCCAUUUGCAUAUAAAGUUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGUGCUUUCUCUGCUCG-UCUGCUUUCUCCUACUAUCGUUAAC ....(((..(((..(((..(..........((((.(((.(((((.(((((((.........)))))))))))).))).))))...........)-..)))..)))..))).......... ( -27.40) >consensus AUGUGUAAUAGAU__UAAGCUUUUCCAUUUGCAUAUAAAGUUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGUGCU______C_UCG_GCUGCUUUCUCACACUCUCGUUAAC ..............................((((((((.(((((.(((((((.........)))))))))))).))))))))...................................... (-19.19 = -20.00 + 0.81)
Location | 5,183,162 – 5,183,275 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -31.59 |
Consensus MFE | -23.31 |
Energy contribution | -23.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.86 |
Structure conservation index | 0.74 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5183162 113 + 22224390 UUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGUGCU------U-UCGGGCUGCUUUCUCACACUCUCGUUAACUGAAAUGUGGCAGUAAAACUGACAAGUGCCGAGGCACUCU ((((.(((((((.........))))))))))).....((((((------(-.((((((((.....((((...(((.....)))..)))))))))...(((....))).)))))))))).. ( -31.50) >DroSec_CAF1 4471 112 + 1 UUGAAUCUUAGGUCUAACUAUCCUAAGGUCAAUGUUAAGUGCU------C-UCG-GCUGCUUUCUCGCACUCUCGUUAACUGAAAUGUGGCAGUAAAACUGACAAGUGCCGAGGCACUCU ((((.(((((((.........))))))))))).....(((((.------(-(((-((.((((..(((((...(((.....)))..)))))(((.....)))..))))))))))))))).. ( -34.80) >DroEre_CAF1 4447 113 + 1 UUGAACCUUCGCUCUUACCAUCCUAAGGUCAAUGUUAAGUGCU------CCUCG-GCUGCUUUCUCAUACUCUCGUUAACUGAAAUGCGGCCGUAAAACUGACAAGUGCCGAGGCACUCU ((((.((((...............))))))))(((((.((...------...((-(((((((((....((....)).....)))).)))))))....)))))))(((((....))))).. ( -29.86) >DroYak_CAF1 4382 119 + 1 UUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGUGCUUUCUCUGCUCG-UCUGCUUUCUCCUACUAUCGUUAACUGAAAUGUGGCAGUAAAACUGACAAGUGCCGGGGCACACU ((((.(((((((.........)))))))))))......(((((((...((((.(-((.(.(((((.((((..(((.....)))...)))).)).))).).))).))))..)))))))... ( -30.20) >consensus UUGAACCUUAGGUCUAACCAUCCUAAGGUCAAUGUUAAGUGCU______C_UCG_GCUGCUUUCUCACACUCUCGUUAACUGAAAUGUGGCAGUAAAACUGACAAGUGCCGAGGCACUCU ((((.(((((((.........)))))))))))(((((..((((............(((((((((....((....)).....)))).)))))))))....))))).((((....))))... (-23.31 = -23.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:43 2006