Locus 1872

Sequence ID X_DroMel_CAF1
Location 5,177,594 – 5,177,696
Length 102
Max. P 0.782880
window3040

overview

Window 0

Location 5,177,594 – 5,177,696
Length 102
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 78.91
Mean single sequence MFE -25.74
Consensus MFE -14.64
Energy contribution -14.48
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -1.98
Structure conservation index 0.57
SVM decision value 0.56
SVM RNA-class probability 0.782880
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5177594 102 - 22224390
CUGCUAGAGAUGGACCAUCGCAUUAGCCCAGAGGUGGUUUAUUUGAUAGUUUUUUUUAAAUGAACAUGCGAUAGAUCUAUUAUAAUAUCAAUA-----------------UUUAUUCCU
........(((((((.(((((((..(((....))).((((((((((.........))))))))))))))))).).))))))............-----------------......... ( -22.20)
>DroSec_CAF1 8481 101 - 1
CUGCUGGAGAUGGACCAUCGCACUAUCCUAGAGGUGGUUCAUUCGAUAGUUCU-UAUAAAUGAACAUGCGAUAGAUCUAUAAUAAUAGCAAUA-----------------UUUAUUCCU
.(((((...((((((.(((((((((((.....))))))..........((((.-.......))))..))))).).))))).....)))))...-----------------......... ( -24.10)
>DroSim_CAF1 8395 101 - 1
CUGCUGGAGAUGGACCAUCGCACUAUCCUAGAGGUGGUUCAUUCGAUAGUUCU-UUUAAAUGAACAUGCGAUAGAUCUAUAAUAAUAGCAAUA-----------------UUUAUUCCU
.(((((...((((((.((((((....((....))..(((((((..(.......-.)..))))))).)))))).).))))).....)))))...-----------------......... ( -24.90)
>DroEre_CAF1 8389 118 - 1
CUGCUAGAGAUGGACCAUCGCACUGGCCUAGAGGUGCUUCAUUCGAUAGUAUU-UUUAAAUUCACAUGCGAUAGGUCUAUUACAAUAUUAAUAUUAAUACGCAAACGCAGUUUAUUCCU
((((..(.((((((((((((((.(((..((((((((((((....)).))))))-))))...)))..)))))).)))))))).)..(((((....))))).......))))......... ( -31.50)
>DroYak_CAF1 8300 115 - 1
CUGCUAGAGAUGGACCAUCGCAUCAGCAUAGAGGUGGUUCAUUCUACAGUAUU-UUUAUAUUAGCAUGCGAUAGAUCUAUUACAAUAUU---AUUAAUACGCAAUCGCAGUUUAUUUCU
(((.(((((.(((((((((.............)))))))))))))))))....-........(((.((((((.(...(((((.......---..)))))..).)))))))))....... ( -26.02)
>consensus
CUGCUAGAGAUGGACCAUCGCACUAGCCUAGAGGUGGUUCAUUCGAUAGUUUU_UUUAAAUGAACAUGCGAUAGAUCUAUUAUAAUAUCAAUA_________________UUUAUUCCU
..((((..(((((((((((.............)))))))))))...))))................((..(((....)))..))................................... (-14.64 = -14.48 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:40 2006