Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 651,480 – 651,597 |
Length | 117 |
Max. P | 0.617854 |
Location | 651,480 – 651,597 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -43.80 |
Consensus MFE | -37.03 |
Energy contribution | -37.37 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.85 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 651480 117 - 22224390 ACAACUCCUGGUAUGUUU---CCGCCGUACUCGCGUGUUCCAUUUGAAGGUUUCUCUGACUUGGAGCCAGUCCUAUGGAGCUGGCAAUCUCCGGUGUAAGCUUGGAUGUGCCCACCAGCA .......(((((..((((---.(((((.....((..(((((((..((.((((((........))))))..))..)))))))..))......))))).))))..((......))))))).. ( -36.60) >DroEre_CAF1 9374 117 - 1 ACAGCUCCUGGUGGGUUU---CCAUCGUGCUCGCCUGUUCUAUCUGAAGGUUUCUCUGACUGGGAGCCAGUCCUACGGAGCUGGCAAUCUCUGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((.(---(((....(((((((..(((.....)))((((((((.....))))(((((..(....)..)))))))))...))))..))).))))...))))))))).. ( -49.10) >DroYak_CAF1 9715 120 - 1 ACAGCUCCUGGUGGGUUUCUUCUACCGUGCUCGCCUGUUCCAUUUGAAGGUUUCUCUGACUAGGAGCCAGUCCUACGGAGCUGGCAAUCUCCGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((....((((....(((((((.............((((.....)))).((((((((..(....)..)))))....)))))))..))).))))...))))))))).. ( -45.70) >consensus ACAGCUCCUGGUGGGUUU___CCACCGUGCUCGCCUGUUCCAUUUGAAGGUUUCUCUGACUAGGAGCCAGUCCUACGGAGCUGGCAAUCUCCGGCGUAAGCUUGGAUGUGCCCACCAGCA .......(((((((((................(((.(((((....((.((((((........))))))..))....))))).)))....((((((....)).))))...))))))))).. (-37.03 = -37.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006