Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,141,286 – 5,141,376 |
Length | 90 |
Max. P | 0.712089 |
Location | 5,141,286 – 5,141,376 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.81 |
Mean single sequence MFE | -36.16 |
Consensus MFE | -15.26 |
Energy contribution | -13.78 |
Covariance contribution | -1.48 |
Combinations/Pair | 1.35 |
Mean z-score | -1.78 |
Structure conservation index | 0.42 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5141286 90 - 22224390 ---------------------------U-GUGUAUUGG--GUUGUGUAUAUAUCGCGUGCUUUGCGUUUGCGCAGCGGCAACGUUCUGAGUUCGUUUGCCGCUCGACGAUCGAAUUUCAA ---------------------------(-(...(((.(--(((((........((((.....))))....((.((((((((((.........)).)))))))))))))))).)))..)). ( -26.80) >DroVir_CAF1 35791 99 - 1 ------------------AAUUG-GAAUUUGGAUUUGG--AGUGUGUGACUGGCGCGUGCUUUGCGUUUGCGCAGCCGCAGCGUUCUGAGUUCGUUUGUCGAUUUGCGCUCGAAUUUCAA ------------------.....-....(((((.((.(--(((((.((((..(((...((((.(((((.(((....))))))))...)))).)))..))))....)))))).)).))))) ( -31.90) >DroPse_CAF1 10906 85 - 1 -------------------------------GUGUGUG--GGUGUGU--UGGGCGCGUGCUAUGCGUCUGCGCAGCGGCAACGUUCUGAUUUCGUACGACGCCCGGCGCUCGCAUUUCAA -------------------------------..(((((--(((((..--(((((((((((..((((....))))(((....))).........))))).))))))))))))))))..... ( -41.00) >DroMoj_CAF1 38056 100 - 1 ------------------AAUUG-GAGU-UGGAGUUGGGUAGUGUGUGGCCGGCGCGUGCUUUGCGUUUGCGCAGCCGCAGCGUUCUGAGUUCGUUUGUCGAUUUGCGCUUGAAUUUCAA ------------------..(((-((((-(.(((((.((..((.((((((..(((((.((.....)).))))).))))))))...)).)..(((.....))).....)))).)))))))) ( -31.20) >DroPer_CAF1 12249 115 - 1 UAAGCGAGUAUAACUCCCGAUUGUGCGU-GUGUGUGUG--GGUGUGU--UGGGCGCGUGCUAUGCGUCUGCGCAGCGGCAACGUUCUGAUUUCGUACGACGCCCGGCGCUCGCAUUUCAA ...((((((...((.((((...(..(..-..)..).))--)).))((--(((((((((((..((((....))))(((....))).........))))).))))))))))))))....... ( -49.90) >consensus ___________________AUUG_G__U_GGGUGUUGG__GGUGUGU__CGGGCGCGUGCUUUGCGUUUGCGCAGCGGCAACGUUCUGAGUUCGUUUGACGCUCGGCGCUCGAAUUUCAA .................................(((.(..(((((......((.((((((..((((....))))...)).)))).)).....((.....))....)))))).)))..... (-15.26 = -13.78 + -1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:33 2006