Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,132,953 – 5,133,048 |
Length | 95 |
Max. P | 0.845353 |
Location | 5,132,953 – 5,133,048 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -21.80 |
Energy contribution | -21.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 1.00 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5132953 95 + 22224390 UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA ...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80) >DroSec_CAF1 9165 95 + 1 UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA ...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80) >DroSim_CAF1 8937 95 + 1 UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA ...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80) >DroYak_CAF1 10069 95 + 1 UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA ...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80) >consensus UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA ...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... (-21.80 = -21.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:30 2006