Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,132,180 – 5,132,280 |
Length | 100 |
Max. P | 0.656431 |
Location | 5,132,180 – 5,132,280 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 92.49 |
Mean single sequence MFE | -29.53 |
Consensus MFE | -25.27 |
Energy contribution | -25.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.86 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5132180 100 + 22224390 CCGCAUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUUUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUUCA .(((.(((((.(((((....(((.(((.((((((.........)))))))))))).))))).)))))...((((((.....))))))......))).... ( -30.60) >DroSec_CAF1 8447 100 + 1 CCGCAUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA .((((((..(((((((((.((((...(((....)))..)))).)))))))))...))))))(((((.(..((((((.....))))))......).))))) ( -33.00) >DroSim_CAF1 8220 91 + 1 ---------CCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA ---------............(((((((((((..((((((((....))))))))..)))).)))).)))((((.((.((((....)))).)).))))... ( -25.80) >DroYak_CAF1 9309 99 + 1 CCC-UGCUCCCUGUAUCCCUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA ...-.(((...(((.......(((((((((((..((((((((....))))))))..)))).)))).))).((((((.....)))))))))..)))..... ( -28.70) >consensus CCG_AUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA .....................(((((((((((..(((((((......)))))))..)))).)))).)))((((.((.((((....)))).)).))))... (-25.27 = -25.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:27 2006