Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 650,480 – 650,600 |
Length | 120 |
Max. P | 0.863459 |
Location | 650,480 – 650,600 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -52.57 |
Consensus MFE | -46.58 |
Energy contribution | -46.92 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.31 |
Structure conservation index | 0.89 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 650480 120 + 22224390 UCCCUCAUCAACAUGCACUUUGAGGGACGCUGGCUGGUCGCCAAGGAGCAGUUGCCCCUGCUGCUGGCGCAGAGCCUGCAACUGAUUCAGAAGCUGGUGACCAGGCAGCCCGACUACGCC (((((((.............))))))).((((.((((((((((..((((((((((.....((((....)))).....))))))).)))......)))))))))).))))........... ( -54.72) >DroEre_CAF1 8377 120 + 1 UCCCUCAUCAGCAUGCACUUUGAGGGCAGCUGGCUGGUCGCCAAGGAGCAGUUGCCACUGCUGCUGGCGCAGAGCCUGCAACUGAUUCAGAAGCUGGUGACCAAGCAGCCCGACUACGCG .((((((..((......)).))))))..((((..(((((((((..((((((((((.....((((....)))).....))))))).)))......)))))))))..))))........... ( -47.20) >DroYak_CAF1 8718 120 + 1 UCGCUCAUCAACAUGCACUUGGAGGGCUGCUGGCUGGUCGCCAAGGAGCAGUUGCCCCUGCUGCUGGCGCAGAGUCUGCAGUUGACUCAGAAGCUGGUGACCAGGCAGCCCGACUAUGCG ..............(((...(..(((((((...(((((((((.((.(((((......))))).))(((...(((((.......)))))....)))))))))))))))))))..)..))). ( -55.80) >consensus UCCCUCAUCAACAUGCACUUUGAGGGCAGCUGGCUGGUCGCCAAGGAGCAGUUGCCCCUGCUGCUGGCGCAGAGCCUGCAACUGAUUCAGAAGCUGGUGACCAGGCAGCCCGACUACGCG .((((((.............))))))..((((.((((((((((..((((((((((.....((((....)))).....))))))).)))......)))))))))).))))........... (-46.58 = -46.92 + 0.34)
Location | 650,480 – 650,600 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -52.01 |
Consensus MFE | -42.61 |
Energy contribution | -42.07 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.14 |
Mean z-score | -2.03 |
Structure conservation index | 0.82 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 650480 120 - 22224390 GGCGUAGUCGGGCUGCCUGGUCACCAGCUUCUGAAUCAGUUGCAGGCUCUGCGCCAGCAGCAGGGGCAACUGCUCCUUGGCGACCAGCCAGCGUCCCUCAAAGUGCAUGUUGAUGAGGGA ...........((((.((((((.(((............(((((.(((.....))).)))))((((((....))))))))).)))))).)))).(((((((.............))))))) ( -51.92) >DroEre_CAF1 8377 120 - 1 CGCGUAGUCGGGCUGCUUGGUCACCAGCUUCUGAAUCAGUUGCAGGCUCUGCGCCAGCAGCAGUGGCAACUGCUCCUUGGCGACCAGCCAGCUGCCCUCAAAGUGCAUGCUGAUGAGGGA ..........(((((.((((((.((((.....((..(((((((..(((((((....)))).))).))))))).)).)))).)))))).))))).((((((.(((....)))..)))))). ( -51.20) >DroYak_CAF1 8718 120 - 1 CGCAUAGUCGGGCUGCCUGGUCACCAGCUUCUGAGUCAACUGCAGACUCUGCGCCAGCAGCAGGGGCAACUGCUCCUUGGCGACCAGCCAGCAGCCCUCCAAGUGCAUGUUGAUGAGCGA .((((.(..(((((((((((((.(((((....(((((.......)))))(((....)))))((((((....))))))))).))))))...)))))))..)..)))).((((....)))). ( -52.90) >consensus CGCGUAGUCGGGCUGCCUGGUCACCAGCUUCUGAAUCAGUUGCAGGCUCUGCGCCAGCAGCAGGGGCAACUGCUCCUUGGCGACCAGCCAGCAGCCCUCAAAGUGCAUGUUGAUGAGGGA .(((.....(((((((((((((..(((..((((((....)).))))..))).(((((.(((((......))))).).))))))))))...)))))))......))).............. (-42.61 = -42.07 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:27 2006