Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,128,025 – 5,128,185 |
Length | 160 |
Max. P | 0.991552 |
Location | 5,128,025 – 5,128,145 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -30.82 |
Energy contribution | -33.06 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5128025 120 + 22224390 CACCCACCAUGCCCACAUAGCCGCCCACUUUGGCGCCCAGUCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUA .........((((......((((((......))))....(.((((((((((......))))))..((((.(((((......))))))))))))).).))....))))............. ( -40.80) >DroSec_CAF1 4441 120 + 1 CACCCACCACGCCCACUUAGCCGCCCACUUUGGCGCCCAGUCCGCCCGCUGCUCCGUCAGCGGCAGACAUGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUA ..........((..(((..((.(((......)))))..)))..))..((((((.(((..((.((.((((.(((((......))))))))))).))..)))...))))))........... ( -41.40) >DroSim_CAF1 4147 120 + 1 CACCCACCACGCCCAUUUAGCCGCCCACUUUGGCGCCCAGUCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUA ..........(((......((((((......))))....(.((((((((((......))))))..((((.(((((......))))))))))))).).))....))).............. ( -40.10) >DroYak_CAF1 5118 110 + 1 CACCCUCCACGCCCACUCUGCCGCCCACUCCACCGCCCAGUC----------UCCGUCAGCAGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUA ..........(((..(.(((((((..........((...((.----------.......)).)).((((.(((((......))))))))))))).))).)...))).............. ( -28.20) >consensus CACCCACCACGCCCACUUAGCCGCCCACUUUGGCGCCCAGUCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUA ..........(((......(((((.......((((.......)))).((((((.....)))))).((((.(((((......))))))))))))))........))).............. (-30.82 = -33.06 + 2.25)
Location | 5,128,025 – 5,128,145 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -51.90 |
Consensus MFE | -41.61 |
Energy contribution | -43.55 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.08 |
Mean z-score | -2.10 |
Structure conservation index | 0.80 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5128025 120 - 22224390 UAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGACUGGGCGCCAAAGUGGGCGGCUAUGUGGGCAUGGUGGGUG .....((((((((.(((.......))).))))))))((.(((..((((((..(((((((((((......)))).)))))))(((.((((......)))).)))...)))))))))..)). ( -52.30) >DroSec_CAF1 4441 120 - 1 UAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCAUGUCUGCCGCUGACGGAGCAGCGGGCGGACUGGGCGCCAAAGUGGGCGGCUAAGUGGGCGUGGUGGGUG .....((((((((.(((.......))).))))))))((.(((..(((((((((((((((((((......)))).)))))))(((.((((......)))).))).)))))))))))..)). ( -54.90) >DroSim_CAF1 4147 120 - 1 UAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGACUGGGCGCCAAAGUGGGCGGCUAAAUGGGCGUGGUGGGUG ....(((..(..(.((((...((((.((((..((((....))))..((((..(((((((((((......)))).))))))).))))......)))).)))).....)))))..)..))). ( -53.00) >DroYak_CAF1 5118 110 - 1 UAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCUGCUGACGGA----------GACUGGGCGGUGGAGUGGGCGGCAGAGUGGGCGUGGAGGGUG ..............(((((((((.(.((((...((((((......))))))..(((((((((.((...----------.(((....)))...)).))))))))))))).)))))))))). ( -47.40) >consensus UAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGACUGGGCGCCAAAGUGGGCGGCUAAGUGGGCGUGGUGGGUG .....((((((((.(((.......))).))))))))...((((.((((((..(((((((((((......)))).)))))))(((.((((......)))).)))...))))))...)))). (-41.61 = -43.55 + 1.94)
Location | 5,128,065 – 5,128,185 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -43.17 |
Consensus MFE | -42.07 |
Energy contribution | -42.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.45 |
Structure conservation index | 0.97 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5128065 120 + 22224390 UCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUAAAAGUUGCGUCUGCAAUUUUGCUCUUGCCUUAUUUUAUUU ..(((..(((((.(((....)))..((((.(((((......))))))))))))))..))).(((((((((((...........)))))....(((....)))...))))))......... ( -43.40) >DroSec_CAF1 4481 120 + 1 UCCGCCCGCUGCUCCGUCAGCGGCAGACAUGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUAAAAGUUGCGUCUGCAAUUUUGCUCUUGCCUUAUUUUAUUU ..(((..(((((.(((....)))..((((.(((((......))))))))))))))..))).(((((((((((...........)))))....(((....)))...))))))......... ( -43.40) >DroSim_CAF1 4187 120 + 1 UCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUAAAAGUGGCGUUUGCAAUUUUGCUCUUGCCUUAUUUUAUUU .......((((((.(((..((.((.((((.(((((......))))))))))).))..)))...)))))).........(((((..((((...(((....)))...))))...)))))... ( -42.70) >consensus UCCGCCCGCUGCUCCGUCAGCGGCAGACAAGGACAUCAAGUUGUCCUGUCGCGGCCAGCGAAAGGCAGCAACAAAUUUUAAAAGUUGCGUCUGCAAUUUUGCUCUUGCCUUAUUUUAUUU ..(((..(((((.(((....)))..((((.(((((......))))))))))))))..))).(((((((((((...........)))))....(((....)))...))))))......... (-42.07 = -42.40 + 0.33)
Location | 5,128,065 – 5,128,185 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -43.27 |
Consensus MFE | -43.27 |
Energy contribution | -43.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.07 |
Structure conservation index | 1.00 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5128065 120 - 22224390 AAAUAAAAUAAGGCAAGAGCAAAAUUGCAGACGCAACUUUUAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGA .........((((((...(((....)))....(((((...........))))))))))).......(((((((((((((......))))).))))..((((((......)))))))))). ( -44.60) >DroSec_CAF1 4481 120 - 1 AAAUAAAAUAAGGCAAGAGCAAAAUUGCAGACGCAACUUUUAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCAUGUCUGCCGCUGACGGAGCAGCGGGCGGA .........((((((...(((....)))....(((((...........))))))))))).......(((((((((((((......))))).))))..((((((......)))))))))). ( -44.60) >DroSim_CAF1 4187 120 - 1 AAAUAAAAUAAGGCAAGAGCAAAAUUGCAAACGCCACUUUUAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGA ............((((........))))...((((((...........))((((((..((((..(((.(((((((((((......))))).)))).)).)))..)))))))))))))).. ( -40.60) >consensus AAAUAAAAUAAGGCAAGAGCAAAAUUGCAGACGCAACUUUUAAAAUUUGUUGCUGCCUUUCGCUGGCCGCGACAGGACAACUUGAUGUCCUUGUCUGCCGCUGACGGAGCAGCGGGCGGA .........((((((...(((....)))....(((((...........))))))))))).......(((((((((((((......))))).))))..((((((......)))))))))). (-43.27 = -43.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:23 2006