Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,125,450 – 5,125,545 |
Length | 95 |
Max. P | 0.783279 |
Location | 5,125,450 – 5,125,545 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -25.63 |
Consensus MFE | -23.90 |
Energy contribution | -23.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.93 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5125450 95 - 22224390 AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCU .((((....((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....)))))))........)))) ( -25.60) >DroSec_CAF1 1677 95 - 1 AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGGCUUGAGCCAAACGUUGUUAA .........((((((.....(((((((((...(((...((..((((((((.....))))))))..))...)).)..)))))))))..)))))).. ( -25.90) >DroSim_CAF1 1518 95 - 1 AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCA ..(((....((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....)))))))........))). ( -25.40) >consensus AGGCAAUUAAACGAUUUACGUUGGCUUAAAAACACACUCUUCUUUGGCAAAGAGUUUGCCAAAUUGGUUGGUCGCCUUGAGCCAAACUUUGUGCA ..((((...((((.....))))(((((((....((...((..((((((((.....))))))))..))...))....))))))).....))))... (-23.90 = -23.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:18 2006