Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,124,946 – 5,125,046 |
Length | 100 |
Max. P | 0.876700 |
Location | 5,124,946 – 5,125,046 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.41 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -22.10 |
Energy contribution | -22.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.92 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5124946 100 + 22224390 AUGUUGCAACAACGUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCA---GCAACAACAA .((((((.....(((.((((((((....))))....(((((.((....(((((...))))).)).))))).))))...))).((...)).---)))))).... ( -24.30) >DroSec_CAF1 1222 103 + 1 AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA .((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).)))))............((......)).)))))).... ( -23.80) >DroSim_CAF1 1066 103 + 1 AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA .((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).)))))............((......)).)))))).... ( -23.80) >consensus AUGUUGCAACAACUUGUACAACAACAACUUGUAGGAGACAAUAGAUAAUGAUGACGCGUCAGCUUUUGUCAUGUAACAACGAGCACAGCAGCAGCAACAACAA .((((((.((((.((((......)))).))))....(((((.((....(((((...))))).)).))))).......................)))))).... (-22.10 = -22.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:17 2006