| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,100,920 – 5,101,010 |
| Length | 90 |
| Max. P | 0.998621 |
| Location | 5,100,920 – 5,101,010 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 69.44 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -14.55 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.56 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5100920 90 + 22224390 ACCACGAUAUCAAGCUCCCAGCACCCAGCAUCCA---------GCAUCCAUGAAUCCAUGGAUCCUGCUAUCCUGGCAUCCAGGUGGCAGUCAACAGGC .((..........(((....((.....))....)---------))(((((((....))))))).((((((.(((((...)))))))))))......)). ( -27.80) >DroEre_CAF1 12214 99 + 1 ACCACGACAUCCAGCACCCAGCAUCCAGCAUUAAAGGAUACUGCUAUCCUGGCAUCCUGGCAUCCUGGCAUCCAGGCAUCCAGGUGGCAGUCAACAGGC .....(((...(((....(((.((((.........)))).))).....)))((..(((((.(((((((...))))).)))))))..)).)))....... ( -30.20) >DroYak_CAF1 11950 68 + 1 ACCACGACAUCCAGCACCCAGCAUCCA-------------------------------UGGAUCCUGCUAUCCUGGCAUCCAGGUGGCAGUCAACAGGC .((.....(((((((.....)).....-------------------------------))))).((((((.(((((...)))))))))))......)). ( -20.20) >consensus ACCACGACAUCCAGCACCCAGCAUCCAGCAU__A___________AUCC__G_AUCC_UGGAUCCUGCUAUCCUGGCAUCCAGGUGGCAGUCAACAGGC .((..........((.....))..........................................((((((.(((((...)))))))))))......)). (-14.55 = -15.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:09 2006