| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,100,821 – 5,100,911 |
| Length | 90 |
| Max. P | 0.619202 |
| Location | 5,100,821 – 5,100,911 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 82.83 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -17.86 |
| Energy contribution | -18.45 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5100821 90 + 22224390 ACAAGGACGACGCACAGGACAAAGUGGCGACGGGAGUUGCCUG--AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG ..........(((............((((((....))))))..--....((((.((((....))))))))..............)))..... ( -23.40) >DroPse_CAF1 13317 80 + 1 ---------ACGCAAAGGACGAAC-GCGGAGCAAAGUUGCCUG--AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG ---------.(((......((...-.)).......(((((.((--....((((.((((....))))))))......)).))))))))..... ( -18.40) >DroSec_CAF1 11980 90 + 1 ACAAGGACGACGCACAGGACGAAGUGGCGACGGGAGUUGCCUG--AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG ..........(((............((((((....))))))..--....((((.((((....))))))))..............)))..... ( -23.40) >DroSim_CAF1 13278 90 + 1 ACAAGGACGACGCACAGGAGGAAAUGGCGACGGGAGUUGCCUG--AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACAAGCAACGCGGUUAG ..........(((............((((((....))))))..--....((((.((((....))))))))..............)))..... ( -23.40) >DroYak_CAF1 11860 81 + 1 A---------CGCACAGGACGAAGUGGCGACGGGAGUUGCCUG--AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG .---------(((............((((((....))))))..--....((((.((((....))))))))..............)))..... ( -23.40) >DroAna_CAF1 11770 75 + 1 -----------GC---GUUGGACGUGGCGA---AAGUUGUCGGCAAAAAUUGCUGGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG -----------((---((((..((((((..---..)))(((((((.....)))))))..................)))..))))))...... ( -24.50) >consensus A________ACGCACAGGACGAAGUGGCGACGGGAGUUGCCUG__AAAAUUGCUAGCGGAAAUGCUGCAAAAUUAACGAGCAACGCGGUUAG ..........(((............((((((....))))))........((((.((((....))))))))..............)))..... (-17.86 = -18.45 + 0.59)
| Location | 5,100,821 – 5,100,911 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 82.83 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -13.85 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5100821 90 - 22224390 CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU--CAGGCAACUCCCGUCGCCACUUUGUCCUGUGCGUCGUCCUUGU ........(((((..(......(((((((......))).))))....--)..)))))...((.(((.((........))))).))....... ( -21.40) >DroPse_CAF1 13317 80 - 1 CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU--CAGGCAACUUUGCUCCGC-GUUCGUCCUUUGCGU--------- .....((((((((...........))))).....(((.(((((....--.((....)))))))..))-)..........))).--------- ( -18.40) >DroSec_CAF1 11980 90 - 1 CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU--CAGGCAACUCCCGUCGCCACUUCGUCCUGUGCGUCGUCCUUGU ........(((((..(......(((((((......))).))))....--)..)))))...((.(((.((........))))).))....... ( -21.40) >DroSim_CAF1 13278 90 - 1 CUAACCGCGUUGCUUGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU--CAGGCAACUCCCGUCGCCAUUUCCUCCUGUGCGUCGUCCUUGU ........((((((((......(((((((......))).))))....--))))))))...((.(((((........)).))).))....... ( -24.50) >DroYak_CAF1 11860 81 - 1 CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU--CAGGCAACUCCCGUCGCCACUUCGUCCUGUGCG---------U ........(((((..(......(((((((......))).))))....--)..)))))......(((.((........)))))---------. ( -18.10) >DroAna_CAF1 11770 75 - 1 CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCCAGCAAUUUUUGCCGACAACUU---UCGCCACGUCCAAC---GC----------- ......((((((..(((.....((((.((......))..)))).....(.(((......---))).))))..))))---))----------- ( -16.00) >consensus CUAACCGCGUUGCUCGUUAAUUUUGCAGCAUUUCCGCUAGCAAUUUU__CAGGCAACUCCCGUCGCCACUUCGUCCUGUGCGU________U ........((((((....((..(((((((......))).))))..))....))))))................................... (-13.85 = -14.18 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:08 2006