Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,097,881 – 5,097,996 |
Length | 115 |
Max. P | 0.511323 |
Location | 5,097,881 – 5,097,996 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 85.58 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -13.85 |
Energy contribution | -15.29 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.13 |
Mean z-score | -1.99 |
Structure conservation index | 0.62 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5097881 115 - 22224390 GAAUCGUA-CAAGACACAACAAUUAGAGCUGGAGAAAAUAUAGUUUCCCUAUAGUUGUACACAUGGAAAACCGGAUUAAUCUCCAGCCCCACACAACAUAUACAUACAUUUACGAU ..((((((-...(......).......((((((((...(((((.....)))))..........(((....)))......)))))))).......................)))))) ( -19.80) >DroSec_CAF1 9149 115 - 1 GAAUCGGGCCAAGACACAACAAU-AAAGCUGGAGAAAAUUCAGUUUCCCUAUAGUUGUAUGCUUGGAAAACAGGAUUAAUCUCUAGCUCCACACAACAUAUACAUACAUUUACGAU ..((((..(((((..(((((.((-(((((((((.....))))))))...))).)))))...)))))......((((((.....))).)))......................)))) ( -23.70) >DroSim_CAF1 10766 115 - 1 GAAUCGGGCCAAGACACAACAAU-AGAGCUGGAGAAAAUUCAGUUUCCCCAUAGUUGUAUGCUUGGAAAACAGGAUUAAUCUCUAGCUCCACACAACAUAUACAUACAUUUACGAU ..(((((.......)........-.((((((((((.(((((.((((..(((.(((.....)))))).)))).)))))..)))))))))).......................)))) ( -25.70) >DroEre_CAF1 9230 114 - 1 UAAUCGGA-CAAGACACAACAAU-AAAGCUGGAGAAACGUCCGUUUCCCCAUAGUUUUAUACUUGGAAAACAGGAUUUAUCUCCAGCUCCACACAACAUAUACAUACAUUUACGAU ..((((..-...(......)...-..(((((((((.(.((((.(((((....(((.....))).)))))...)))).).)))))))))........................)))) ( -26.50) >DroYak_CAF1 9076 102 - 1 UAAUCGGA-CAAGACACAACAAU-AGAGCU------------GUUUCUUUAUAGUUUAACACUUGGAAAACUGGAUUAAUCUCCAGCCCCGCACAACAUAUACCUACAUUUACGAU ....(((.-((((....(((.((-((((..------------....)))))).))).....)))).....(((((......)))))..)))......................... ( -15.50) >consensus GAAUCGGA_CAAGACACAACAAU_AGAGCUGGAGAAAAUUCAGUUUCCCUAUAGUUGUAUACUUGGAAAACAGGAUUAAUCUCCAGCUCCACACAACAUAUACAUACAUUUACGAU ..((((......(......).....((((((((((........(((((....(((.....))).)))))..........)))))))))).......................)))) (-13.85 = -15.29 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:07 2006