Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,094,697 – 5,094,789 |
Length | 92 |
Max. P | 0.524998 |
Location | 5,094,697 – 5,094,789 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -30.41 |
Consensus MFE | -17.49 |
Energy contribution | -17.85 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.33 |
Mean z-score | -1.49 |
Structure conservation index | 0.57 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5094697 92 - 22224390 GCGUAUCUUUAGCAUCUGGCUAAAGUUAUCGCCCAAAUGACGUCGGCUGGCCGCAUUGCUAUUGUUGUUGGUGCCAUGAACAGCUGAG-GAAG------- (((((.(((((((.....))))))).)).)))........(.(((((((....(((.((.(((......))))).)))..))))))).-)...------- ( -28.10) >DroVir_CAF1 8214 86 - 1 UCGAAUCUUAAGCAUUUGGCUAAAGUUGUCGCCCAAAUGACGACGGCUGACCGCGUUGCUGUUGUUAUUGGUGCCAUGCACAGCUA-------------- ..........(((.....)))..(((((((((((((.((((((((((..........)))))))))))))).))...).)))))).-------------- ( -25.50) >DroWil_CAF1 6496 92 - 1 GCGAAUCUUUAGCAUUUGACUAAAGUUAUCGCCCAGGUGACGCCGGCUAACUGCAUUGCUAUUAUUAUUCGUUCCAUGGCCAGCUAAC-ACAA------- ((((..(((((((....).))))))...))))....(((..((.(((((...((................))....))))).))...)-))..------- ( -19.89) >DroMoj_CAF1 9561 99 - 1 GCGAAUCUUUAGCAUUUGGCUGAAGUUGUCGCCCAAAUGGCGACGGCUCACCGCAUGGCUAUUGUUGUUGGUGCCAUGCACAGCUGGA-AAGAGAGAGCG ((...(((((....((..((((.((((((((((.....))))))))))....(((((((.(((......)))))))))).))))..))-.)))))..)). ( -43.60) >DroAna_CAF1 5983 95 - 1 ACGAAUCUUCAGCAUCUGGCUGAAGUUAUCACCCAGGUGGCGGCGGCUGACGGCGUUGCUGUUGUUAUUGGUGCCAUGGACAGCUGAA-AAUGGAC---- .......((((((..((((.(((.....))).))))((((((.(((.((((((((....))))))))))).)))))).....))))))-.......---- ( -33.30) >DroPer_CAF1 6783 92 - 1 GCGGAUCUUCAGCAUUUGGCUGAAGUUGUCCCCCAAAUGGCGGCGGCUCACCGCAUUGCUGUUGUUAUUGGCGCCGUGCACAGCUACAGGAU-------- ((((..(((((((.....)))))))..(((((((....)).)).)))...))))...(((((.((...((....)).)))))))........-------- ( -32.10) >consensus GCGAAUCUUUAGCAUUUGGCUAAAGUUAUCGCCCAAAUGACGACGGCUGACCGCAUUGCUAUUGUUAUUGGUGCCAUGCACAGCUAAA_AAA________ ((((..(((((((.....)))))))...))))((.((((((((.(((..........))).))))))))))............................. (-17.49 = -17.85 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:06 2006