Locus 1845

Sequence ID X_DroMel_CAF1
Location 5,089,225 – 5,089,328
Length 103
Max. P 0.937458
window3000

overview

Window 0

Location 5,089,225 – 5,089,328
Length 103
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.19
Mean single sequence MFE -13.15
Consensus MFE -6.97
Energy contribution -6.63
Covariance contribution -0.33
Combinations/Pair 1.33
Mean z-score -2.19
Structure conservation index 0.53
SVM decision value 1.26
SVM RNA-class probability 0.937458
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5089225 103 + 22224390
UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC------CCAAAAACGCUAGA--AAACAAAAAUACAGAU
......((((((........((((...((((((.....))))))..))))...(((((...))))).......------........))).))--)............... ( -15.80)
>DroEre_CAF1 590 98 + 1
UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC------CCAAAAC-GCUAGA--GCA----AAUACAGAU
......((((((........((((...((((((.....))))))..))))...(((((...))))).......------.......-))).))--)..----......... ( -15.20)
>DroWil_CAF1 653 90 + 1
UUAAAAUUCAACAGCAACCAUUGUCACCACCCAAGCCAAUGGUGCCACAAAAAUUGCCAAAGGUAAAAAAAACCGACAUCAAA---------------------GAAACAU
......(((....(((.((((((.(.........).)))))))))........(((((...))))).................---------------------))).... ( -12.90)
>DroYak_CAF1 607 99 + 1
UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGUCAAAGGUAAAAAGAUC------CCAAAAA-GCUAGA--AAAA---AAAACAGAU
......((((((.((((...((((...((((((.....))))))..))))...))))....((..........------)).....-))).))--)...---......... ( -13.90)
>DroMoj_CAF1 578 93 + 1
UUAAAAUUCAACAACAACCAUUGUCACCUCCCAAGCCAAUGGUUCCACAAAAAUUACCAAAGGUAAAAGUAAA------A--------UCAUACAAAAA---AA-AAAAAU
...............((((((((.(.........).)))))))).........(((((...)))))..(((..------.--------...))).....---..-...... ( -10.10)
>DroAna_CAF1 458 93 + 1
UUAAAAUUCAACAACAACCAUUGUCACCACCCAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAAUUG------UCAAAGA---------AAAU---CAAACGCAG
......(((....((((...(((((((((.(......).)))))..))))...(((((...)))))....)))------)....))---------)...---......... ( -11.00)
>consensus
UUAAAAUUCAACAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC______CCAAAAA__CUAGA__AAA____AAAACAGAU
..........((((......))))..........(((.(((((............))))).)))............................................... ( -6.97 =  -6.63 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:05 2006