Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,088,655 – 5,088,751 |
Length | 96 |
Max. P | 0.635825 |
Location | 5,088,655 – 5,088,751 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -17.49 |
Energy contribution | -17.80 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -1.09 |
Structure conservation index | 0.75 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5088655 96 - 22224390 CUAAUUUUUAAUGA-AUA----UACCAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA ..............-...----.................((((((((((.(((......))).))))))))))........(((((((....)).))))). ( -23.00) >DroVir_CAF1 41 79 - 1 ---------------AUG-------GUACUCACCUUUAUGGAUGGGGGUCCACUGGAGUGGGAAUCAUUAUCCGCCAGCACCGAGGGAUUGUUCUCAUCAA ---------------.((-------((.((((((.....)).))))..(((((....)))))...........)))).....((((((....)))).)).. ( -19.90) >DroSec_CAF1 41 96 - 1 CUAAUUUUUAAUGA-AUA----UAACAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA ..............-...----.................((((((((((.(((......))).))))))))))........(((((((....)).))))). ( -23.00) >DroEre_CAF1 41 100 - 1 CUAAUUUUUGAUGG-AUAUAUGUACUAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUGUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA .....(((((.(((-(((.(((.......((((.(((.(((((....)))))...))).))))..))))))))).))))).(((((((....)).))))). ( -24.30) >DroYak_CAF1 41 93 - 1 G----UUUUAAUGGGAAA----UAUCAACUCACCUUAAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA (----((((..((((...----......)))).......((((((((((.(((......))).))))))))))...)))))(((((((....)).))))). ( -25.30) >DroAna_CAF1 41 91 - 1 UGAGUUUCUAUCGC-AU---------AGCUUACCUUGAUCGAUGGCGGUCCACUGGAAUGCGAGUCGUUGUCGGCCAGGACCGAGGGAUUGUUCUCAUCCA ((((..(((.((((-..---------.))....((((..(((..((((..(.(......).)..))))..)))..))))...)).))).....)))).... ( -24.60) >consensus CUAAUUUUUAAUGA_AUA____UA_CAACUCACCUUUAUGGAUGGUGGUCCACUGGAAUGUGAAUCAUUAUCCGCCAAAACCGAUGGAUUGUUCUCAUCGA ......................................(((((((((((.(((......))).))))))))))).......(((((((....)).))))). (-17.49 = -17.80 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:04 2006