Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,088,110 – 5,088,210 |
Length | 100 |
Max. P | 0.698220 |
Location | 5,088,110 – 5,088,210 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -19.33 |
Energy contribution | -19.82 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5088110 100 + 22224390 CCAGAGAGCCAAGUCCAGGAAAAU------CGUACAAAUUAUUAGCUUUUGUCUGCACAGGCAAAUAAAUGGGCGGCACUUUGGAAACUUGGUGUUUCUCUAUUCU ..(((((((((((((((((....(------((..((..(((((.((((.((....)).)))).))))).))..)))...))))))..))))))...)))))..... ( -27.90) >DroSec_CAF1 5255 100 + 1 CCAGAGAGCCAAGUCCAGGAGAAU------CGUACAAAUUAUUAGCUUUUGUCUGCACAGGCAAGCAAAUGGGCGGCACUUUGGAAACUUGGUGUUUCUCUAUUCU ..((((((((((((((((.((..(------(((.....(((((.(((..(((((....)))))))).)))))))))..)))))))..))))))...)))))..... ( -28.30) >DroEre_CAF1 5356 89 + 1 CCAGAGAGCCAAGUCCAGAAAAAU------CCUACAAAUUAUAAGCUUUUGUCUGCCCAGGCA----AAUGGGCGGCACUUGGGAAAUUUGGUGUUUCU------- (((((...((((((((........------...(((((.........)))))..(((((....----..))))))).))))))....))))).......------- ( -25.60) >DroYak_CAF1 6122 102 + 1 CCAGAUAGCCAAGUCCAGGAAAACGUAAUACGUACAAAUUAUUAGCAUUUGUCUGCACAGGCA----AAUGGGCGGCACUAUGGAAAUUUGGUGUUUCUGUAUUUU .((((..(((((.((((.....(((.....)))............(((((((((....)))))----))))..........))))...)))))...))))...... ( -26.90) >consensus CCAGAGAGCCAAGUCCAGGAAAAU______CGUACAAAUUAUUAGCUUUUGUCUGCACAGGCA____AAUGGGCGGCACUUUGGAAACUUGGUGUUUCUCUAUUCU .(((((.(((..(((((................(((((.........))))).(((....)))......)))))))).)))))(((((.....)))))........ (-19.33 = -19.82 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:03 2006