Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,082,052 – 5,082,172 |
Length | 120 |
Max. P | 0.817934 |
Location | 5,082,052 – 5,082,172 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -39.21 |
Energy contribution | -39.10 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.86 |
Structure conservation index | 0.96 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5082052 120 + 22224390 UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAACGUCGGUGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCU .....((((..((....((....((((.......))))..(((.....)))))....((((((.(((.....))).(((.(((((......))))))))....))))))....)).)))) ( -41.10) >DroSim_CAF1 191 120 + 1 UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAGCGUCGGUGCGGGUCAAGCCCACUGAGGUGGAUUCCACCACCCAGACUACGCCAAAGAACGAGGCC ..(((.((..((((...((....((((.......))))..(((.....)))...)).)))).))(((.....))).(((.(((((......)))))))).................))). ( -39.10) >DroYak_CAF1 191 120 + 1 UCGCCAGCCCCCGAAGAGCAAUCGCCGCAAAUACUGGCCAUGGAAUCUCCAGCUACGUCGGCGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCC ..(((((....((..((....))..))......)))))..(((.....)))(((.((((((((.(((.....))).(((.(((((......))))))))....))))))....)).))). ( -42.80) >consensus UCGCCAGCCCCCGAAGAGCAAUCGCCACAAAUACUGGCAAUGGAAUCACCAGCAACGUCGGUGCGGGUCAAACCCACUGAGGUGGAUUCCACCACCCAGACUACGCCGAAGAACGAGGCC ......(((..((....((....((((.......))))..(((.....)))))....((((((.(((.....))).(((.(((((......))))))))....))))))....)).))). (-39.21 = -39.10 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:01 2006