Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,078,596 – 5,078,702 |
Length | 106 |
Max. P | 0.743455 |
Location | 5,078,596 – 5,078,702 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.46 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -17.43 |
Energy contribution | -17.65 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.80 |
Structure conservation index | 0.64 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5078596 106 + 22224390 CCCAAUCAA-------------AUUGUGAGAGGACAGCAAAAGUUACUUGACUAAUUCCCCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUGGAUCACGUCCUCUUCAAU .........-------------((((.((((((((......((((....)))).....((.((((((((..(((............)))..)))))))).)).....)))))))))))) ( -31.70) >DroVir_CAF1 54219 99 + 1 CUGA--------------------UAACUAAGGACAGCAUAAGUUACUUGACUAAUUCCCCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUCGAUCACGUGCUCUUCAAU ....--------------------.......(((.(((((.((((....))))........((((((((..(((............)))..))))))))........))))).)))... ( -22.00) >DroGri_CAF1 23113 99 + 1 GCGA--------------------UAAUUGAGGACAGCAUAAGUUACUUGACUAAUUUGUCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUCGAUCAUGUGCUCUUCAAU ....--------------------..((((((((..(((((........(((......)))((((((((..(((............)))..)))))))).......))))))))))))) ( -28.00) >DroWil_CAF1 17224 119 + 1 CCCAACCAACCAACGAGUCUCUUUUGCCCGAGGACAGCAUUUGUUACUUGACUAAUUUCUUGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUCGAUCAUGUUCUUUUCAAU .............((((((.(((......)))))).(((.(((((((.(((..(((.....((((.....)))).....)))..))).))))))).))))))................. ( -23.90) >DroMoj_CAF1 43192 99 + 1 ACCG--------------------UAACUGAGGACAGCAUAAGUUACUUGACUAAUUUGUCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUCGACCACGUGCUGUUCAAU ....--------------------.......(((((((((..(((....(((......)))((((((((..(((............)))..))))))))..)))...)))))))))... ( -30.40) >DroAna_CAF1 15962 101 + 1 UCCAAC-----------------CUGCUCGAGGACAGCCA-CGUUACUUGACUAAUUCCCCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUGGACCACGUCCUCUUCAAC ......-----------------......((((((.....-.(((....)))......((.((((((((..(((............)))..)))))))).)).....))))))...... ( -27.10) >consensus CCCA____________________UAACUGAGGACAGCAUAAGUUACUUGACUAAUUCCCCGCAGUUGUUCUGUUUCUCGUUUCUCACGUGGCAGCUGCUCGAUCACGUGCUCUUCAAU .............................(((((..((....(((....))).........((((((((..(((............)))..))))))))........))..)))))... (-17.43 = -17.65 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:57 2006