Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,077,687 – 5,077,803 |
Length | 116 |
Max. P | 0.755771 |
Location | 5,077,687 – 5,077,803 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -23.08 |
Energy contribution | -23.72 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.87 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5077687 116 + 22224390 AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGUACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACA .((((..((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).)))).....))))..... ( -27.20) >DroSec_CAF1 35211 116 + 1 AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUAAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACC .((((..((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).)))).....))))..... ( -27.90) >DroSim_CAF1 35472 116 + 1 AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGCAAGUACUAGAUAUGGGUUAUACC .((((..((((...((((...((((.(((((((....))))))).)))).((((((.....)))))).........)))).((........)).....)))).....))))..... ( -25.10) >DroEre_CAF1 41177 116 + 1 AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGGCUGCACUCUUGAGUGAAAAGUUUUGAAAACGCAAAGUGAAAUAUAGAAAGCACUAGAUAUGGGGUAUACU ..(((..(((...((((((..((((.(((((((....))))))).))))((((....)))).....(((((......))))))))))).)))......(((....))))))..... ( -25.20) >DroYak_CAF1 43036 116 + 1 AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAAAGUUUUCAGAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGGUACACU .......(((...((((((..((((.(((((((....))))))).))))((((....)))).....(((((.....))))).)))))).)))...(((((........)))))... ( -26.60) >consensus AAGCCAACUGGAAGUUUCAAUUAGUGGGCUUGAUGGUUUAAGCUGACUGCACUCUUGAGUGAAGAGUUUUUAAAACGAAAAGUGAAAUAUAGAAAGUACUAGAUAUGGGUUAUACC ...(((.((((.(.((((...((((.(((((((....))))))).)))).((((((.....))))))........................)))).).))))...)))........ (-23.08 = -23.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:56 2006