Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,074,410 – 5,074,510 |
Length | 100 |
Max. P | 0.942240 |
Location | 5,074,410 – 5,074,510 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -31.13 |
Consensus MFE | -22.92 |
Energy contribution | -22.78 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.37 |
Mean z-score | -1.95 |
Structure conservation index | 0.74 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5074410 100 + 22224390 -UAUUUCCCUAUC-GUUAGCUCCAAGCUGCUGGGCUUCAUCUGUGAACUGGUGGAAACAUCGCAGACGGUGCAGCAGCAUAUGAUCCAGAACCGGGGAUUCC -....(((((...-(((.(.((...(((((((.(((...(((((((.....((....))))))))).))).)))))))....)).)...))).))))).... ( -33.90) >DroVir_CAF1 47845 90 + 1 -----------UU-UACAGCUCGAAGCUGUUGGGCUUCAUUUGCGAACUGGUGGAGACAUCACAGACGGUGCAACAGCACAUGAUACAGAAUCGGGGCUUUC -----------..-...(((((...(((((((.(((...((((.....(((((....))))))))).))).)))))))...((((.....)))))))))... ( -29.10) >DroGri_CAF1 17461 91 + 1 -----------UUUUUAAGCUCGAAACUGUUGGGCUUCAUCUGCGAACUAGUGGAAACAUCGCAGACGGUGCAACAGCACAUGAUACAGAAUCGUGGCUUCU -----------.....((((......((((((.(((...(((((((.....((....))))))))).))).))))))..((((((.....)))))))))).. ( -31.40) >DroEre_CAF1 37996 101 + 1 UCAUUCCCAUUUU-GAUAGCUCCAAGCUGCUGGGCUUCAUCUGUGAACUGGUGGAAACUUCGCAGACGGUGCAGCAGCACAUGAUCCAGAACCGGGGAUUCC ..((((((.((((-(....(.....(((((((.(((...(((((((...(((....)))))))))).))).)))))))....)...)))))..))))))... ( -36.00) >DroWil_CAF1 12673 94 + 1 -----GUC--GUU-UACAGCUCCAAAUUGUUGGGCUUCAUCUGUGAGCUAGUGGAAACAUCACAGACAGUGCAGCAGCAUAUGAUCCAGAAUCGUGGAUUUU -----((.--(((-((((((.((((....)))))))...(((((((.....((....)))))))))..))).))).))....((((((......)))))).. ( -25.40) >DroMoj_CAF1 37699 98 + 1 ---UUUCUCGCUU-CACAGUUCAAAGCUCUUGGGCUUCAUCUGCGAACUGGUGGAGACAUCGCAGACUGUGCAACAGCACAUGAUACAGAAUCGAGGCUUCC ---..(((((.((-(..(((((((.....)))))))((((((((((.....((....))))))))).(((((....))))))))....))).)))))..... ( -31.00) >consensus ______CC___UU_UACAGCUCCAAGCUGUUGGGCUUCAUCUGCGAACUGGUGGAAACAUCGCAGACGGUGCAACAGCACAUGAUACAGAAUCGGGGAUUCC .........................(((((((.(((...(((((((.....((....))))))))).))).)))))))........................ (-22.92 = -22.78 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006