Locus 1835

Sequence ID X_DroMel_CAF1
Location 5,072,872 – 5,072,983
Length 111
Max. P 0.915378
window2988

overview

Window 8

Location 5,072,872 – 5,072,983
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.67
Mean single sequence MFE -18.96
Consensus MFE -4.68
Energy contribution -5.88
Covariance contribution 1.20
Combinations/Pair 1.36
Mean z-score -2.00
Structure conservation index 0.25
SVM decision value 1.10
SVM RNA-class probability 0.915378
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5072872 111 + 22224390
ACAAAUAACUUAGUAUAUGAACGAGCACACUGUCCAACCGACAU---------AAUUAAGUUUGUACAAAAGUGCUCAGUUAACAAAAUUAACUUAUUGAAUUUUCAUAUGACUAUUACA
..........(((((((((((.((((((..((((.....)))).---------......((....))....))))))((((((.....)))))).........))))))).))))..... ( -22.70)
>DroSec_CAF1 30451 93 + 1
ACAAAUAACUUAGUAUAUGAACGAGC----------------AU---------AGUUGAGUUUGCAUA-AAGUGCUCAGUUAACUAAAUUCACUUAUUGAAU-UUCAUAUGUCUAUUACA
..........((((((((((......----------------.(---------((((((.(..((((.-..))))..).)))))))((((((.....)))))-)))))))).)))..... ( -18.50)
>DroSim_CAF1 31037 93 + 1
ACAAAUAACUUAGUAUAUGAACGAGC----------------AU---------AGUUAACUUUGCAUA-AAGUGCUCAGUUAACUAAAUUCACUUAUUGAAU-UUCAUAUGUCUAUUGCA
..........((((((((((......----------------.(---------((((((((..((((.-..))))..)))))))))((((((.....)))))-)))))))).)))..... ( -22.30)
>DroEre_CAF1 36564 100 + 1
ACAAAUAACUUAGUAAAUCAACGGGUACACUGUUCAACUAAUAU---------ACUUAAGUU---AUA-AAA-GCUCAGUUAAGAAAAUUCACUU---AAAU-UUCAUAUUCCUAUUA--
....(((((((((((....(((((.....))))).........)---------)).))))))---)).-...-......(((((........)))---))..-...............-- ( -10.02)
>DroYak_CAF1 38360 112 + 1
ACAAAUAACUUAGUAUAUGAACGAGCACACUGUUCAACUGAUAUCUGUGUGUUAGUUAGGUU---AUA-AAGUGGUCAGCUUACAAAAUUCACUU---GGGU-UUCGUAAUUCUAGCAUA
....((((((((.....((((((.......))))))((((((((....))))))))))))))---)).-.....(..((.((((.((((((....---))))-)).))))..))..)... ( -21.30)
>consensus
ACAAAUAACUUAGUAUAUGAACGAGCACACUGU_CAAC__A_AU_________AGUUAAGUUUG_AUA_AAGUGCUCAGUUAACAAAAUUCACUUAUUGAAU_UUCAUAUGUCUAUUACA
..........(((((((((((.................................(((((.(..((((....))))..).)))))...((((.......)))).)))))))).)))..... ( -4.68 =  -5.88 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:54 2006