Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,066,295 – 5,066,407 |
Length | 112 |
Max. P | 0.839517 |
Location | 5,066,295 – 5,066,407 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -6.28 |
Energy contribution | -7.89 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.12 |
Mean z-score | -2.06 |
Structure conservation index | 0.29 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5066295 112 + 22224390 AUUAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUAUUACGGCAUUUCAUGUGCCAUAAACUCCUAAACAUGGAUUGCAUA .................((((...((((((.....((...(((((((.....)))))))..))........(((((.....)))))..............))))))..)))) ( -24.70) >DroSec_CAF1 24112 100 + 1 --UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUC---------UUCAAGUGCCAUAAACUCCUG-ACAUGGAUUGCAUA --...............((((...((((((((.....((((((((((.....))))))).((((((.---------...))))))))).......))-)..)))))..)))) ( -23.50) >DroSim_CAF1 24317 100 + 1 --UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUC---------UUCAAGUGCCAUAAACUCCUG-ACAUGGAUUGCAUA --...............((((...((((((((.....((((((((((.....))))))).((((((.---------...))))))))).......))-)..)))))..)))) ( -23.50) >DroEre_CAF1 30208 92 + 1 --CAUUUAAUACUCU--UAUAA---------------AUGACUAAUGAAGAGGAUUAACAGUACUUAUUACGGCAUUUCAAGAGUCAUAAACUUCUG-AAAUGGAUUGCAUA --...(((((.((((--(....---------------((.....)).))))).)))))...............(((((((..(((.....)))..))-)))))......... ( -15.30) >DroYak_CAF1 32055 107 + 1 --UAUUUAACACUCG--AACAAAUAUCCAUCACUUGAAUGGGUAAUAAAGAGGAUUAGCAGCACUCAUUACAGCAAUUCAAGAGUCAUAAACUUCUG-ACAUGGAUUGCAUA --...((((..(((.--......((((((((....).))))))).....)))..))))..............((((((((...((((........))-)).))))))))... ( -22.10) >consensus __UAUUUAAUACUCCCCUAUGAAUGUCCAUCACUUUGAUGGCUAAUGAAGAGCAUUAGCAGCACUUAUUAC_GCA_UUCAAGUGCCAUAAACUCCUG_ACAUGGAUUGCAUA ......((((.(((............(((((.....)))))........))).))))(((((((((.............)))))).......(((.......))).)))... ( -6.28 = -7.89 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:49 2006