Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,061,208 – 5,061,315 |
Length | 107 |
Max. P | 0.982919 |
Location | 5,061,208 – 5,061,315 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -27.87 |
Consensus MFE | -26.30 |
Energy contribution | -26.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.96 |
Structure conservation index | 0.94 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5061208 107 + 22224390 AAGCAAACAGCAAUAAACGAGUUUUGGCCAAACAAACUGUCGUUUUUGGCCAGCGGAGAAACAGAGGGAAAACUGUAAGAGGCCGAAACUCAAAGGCCAACAAUGCG .........(((......(((((((((((.......((((..(((((.(....).)))))))))((......))......)))))))))))...(.....)..))). ( -28.40) >DroSec_CAF1 19129 101 + 1 AAGCAAACAGCAAUAAACGAGUUUUGGCCAAACAAACUGUCGUU-UUGGCCAGCGGAGAAACAGAGGGAAAACUGUAAGAGGCCGAAACUCAAAAGCCAACA----- ..((.....)).......(((((((((((.......((((..((-(((.....)))))..))))((......))......)))))))))))...........----- ( -27.90) >DroSim_CAF1 19420 101 + 1 AAGCAAACAGCAAUAAACGAGUUUUGGCCAAACAAACUGUCGUU-UUGGCCAGCGGUGAAACAGAGGGAAAACUGUAAGAGGCCGAAACUCAAAAGCCAACA----- ..((.....)).......(((((((((((......(((((.((.-...))..)))))...((((........))))....)))))))))))...........----- ( -27.30) >consensus AAGCAAACAGCAAUAAACGAGUUUUGGCCAAACAAACUGUCGUU_UUGGCCAGCGGAGAAACAGAGGGAAAACUGUAAGAGGCCGAAACUCAAAAGCCAACA_____ ..((.....)).......(((((((((((.......((((((....))).))).......((((........))))....)))))))))))................ (-26.30 = -26.30 + 0.00)
Location | 5,061,208 – 5,061,315 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -24.70 |
Energy contribution | -24.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.95 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5061208 107 - 22224390 CGCAUUGUUGGCCUUUGAGUUUCGGCCUCUUACAGUUUUCCCUCUGUUUCUCCGCUGGCCAAAAACGACAGUUUGUUUGGCCAAAACUCGUUUAUUGCUGUUUGCUU .(((....((((...((((((((((......((((........))))....))).(((((((((((....)))..)))))))))))))))......))))..))).. ( -27.80) >DroSec_CAF1 19129 101 - 1 -----UGUUGGCUUUUGAGUUUCGGCCUCUUACAGUUUUCCCUCUGUUUCUCCGCUGGCCAA-AACGACAGUUUGUUUGGCCAAAACUCGUUUAUUGCUGUUUGCUU -----....(((...((((((((((......((((........))))....))).(((((((-(.(((....))))))))))))))))))......)))........ ( -25.00) >DroSim_CAF1 19420 101 - 1 -----UGUUGGCUUUUGAGUUUCGGCCUCUUACAGUUUUCCCUCUGUUUCACCGCUGGCCAA-AACGACAGUUUGUUUGGCCAAAACUCGUUUAUUGCUGUUUGCUU -----....(((...((((((((((......((((........))))....))).(((((((-(.(((....))))))))))))))))))......)))........ ( -25.00) >consensus _____UGUUGGCUUUUGAGUUUCGGCCUCUUACAGUUUUCCCUCUGUUUCUCCGCUGGCCAA_AACGACAGUUUGUUUGGCCAAAACUCGUUUAUUGCUGUUUGCUU .........(((...((((((((((......((((........))))....))).(((((((.(((....)))...))))))))))))))......)))........ (-24.70 = -24.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:48 2006