| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,049,338 – 5,049,448 |
| Length | 110 |
| Max. P | 0.602372 |
| Location | 5,049,338 – 5,049,448 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 87.41 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -19.25 |
| Energy contribution | -20.25 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5049338 110 - 22224390 GGAGUGUGUGGGUUGAAAAA----AAA---AAAACGAGAGAGCCACCCACACACACACACACAUAUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCU-AAUAAUUUGAUGGCA ((((((((((((((....).----...---....(....)....))))))))))...((......)).............)))....(((((((....)))(-((....))).)))). ( -25.20) >DroSec_CAF1 7912 113 - 1 GGAGUGUGUGGGUUGAAAAAAAAAAAAAUAAAAACGAGAGAGCCACCCACACACACACA----CAUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCU-AAUAAUUUGAUGGCA ((((((((((((((....)...............(....)....)))))))))).((..----..)).............)))....(((((((....)))(-((....))).)))). ( -25.00) >DroSim_CAF1 8089 107 - 1 GGAGUGUGUGGGUUGAAAAA----AAAAUAAAAACGA--GAGCCACCCACACACACACA----CAUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCU-AAUAAUUUGAUGGCA (((((((((((((.(.....----.............--...).)))))))))).((..----..)).............)))....(((((((....)))(-((....))).)))). ( -24.60) >DroEre_CAF1 13259 99 - 1 GGAGUGCGUGGGCUGAAAAA----AA----GAAACGAGAGAACCACCCACAC------A----CAUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCU-AAUAAUUUGAUGGCA ((((((.(((((((......----.)----)...(....).....))))).)------)----).((........))...)))....(((((((....)))(-((....))).)))). ( -21.00) >DroYak_CAF1 15625 101 - 1 GGAGUGUGUGGGUUGGGAAA----AA-----AAACGAGAGAACCACCCACAC----GCA----CGUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCUUAAUAAUUUGAUGGCA (((((((((((((.((....----..-----...........))))))))))----)).----.((((....))))....)))....(((((((....)))((((....)))))))). ( -32.33) >consensus GGAGUGUGUGGGUUGAAAAA____AAA___AAAACGAGAGAGCCACCCACACACACACA____CAUGAAAAGUUACAGGAUCCUUUCGCCAGCAGUCAUGCU_AAUAAUUUGAUGGCA ((((((((((((.((............................)))))))))))...........((........))...)))....((((.(((..............))).)))). (-19.25 = -20.25 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:44 2006