Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,048,664 – 5,048,782 |
Length | 118 |
Max. P | 0.857404 |
Location | 5,048,664 – 5,048,782 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 85.12 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -23.77 |
Energy contribution | -23.99 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -2.43 |
Structure conservation index | 0.75 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5048664 118 - 22224390 UUACAUGGAGGAAAAUGUUCAUGGCAGAUGUUAGCCGAUAAUCUGUGAUUUGCCGCUUACUUUACCGCGAUUUUCGGUUGUAACUGCCGCAAGUAAGUGAAGUAGGUAAAACUAAGUA .(((.(((..............(((((((..(((........)))..)))))))(((((((((((....((((.((((.......)))).))))..)))))))))))....))).))) ( -30.70) >DroSec_CAF1 7468 100 - 1 UUACAUGG---AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU-------------GAAGUAGGUAU--GUAAGUA ....((((---(.....)))))(((((((.((((........)))).)))))))((((((..((((.....(((((((....)))-------------))))..)))).--)))))). ( -30.90) >DroSim_CAF1 7439 100 - 1 UUACAUGG---AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU-------------GAAGUAGGUAU--GUAAGCA ....((((---(.....)))))(((((((.((((........)))).)))))))((((((..((((.....(((((((....)))-------------))))..)))).--)))))). ( -33.30) >consensus UUACAUGG___AAAAUGUUCAUGGCAGAUGUUAGCCGAAAAUCUGGGAUUUGCCGCUUACUUUACCGCGAUUUUCAGUUGUAGCU_____________GAAGUAGGUAU__GUAAGUA ..((((........))))....(((((((.((((........)))).)))))))((((((..(((((((((.....))))).(((...............))).))))...)))))). (-23.77 = -23.99 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:43 2006